barSeed - Barley Seed Development Database

Probe CUST_20171_PI390587928

Source Contig U35_2081

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20171_PI390587928	Hv_44K_v2	GGGTGGCAGTGTAATTTGAATAATAATTCCATATTGGACACTATAAAATGTGACCATGTC	1681	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72860.3	1735	2e-24	1584 - 1643	100	60 / 60	plus	ABC05420
MLOC	MLOC_72860.1	1915	2e-24	1748 - 1807	100	60 / 60	plus	ABC05420
JLOC1	JLOC1_48489.1	1918	8e-25	1632 - 1691	100	60 / 60	plus
Harvest21	ABC05420	1771	3e-25	1665 - 1724	100	60 / 60	plus	ABC05420
Harvest35	U35_2081	1788	3e-25	1682 - 1741	100	60 / 60	plus

Contig Sequence (1788 bp)

>U35_2081 1788 Hv_44K_v2
AAAAAAACGCTTCCTCCATCCCTCTCACGAGTCGCCATTGGCCTCGCGTTGGCTCACTCC
TCGCAGCACACAGTCCTGGTCTCCGCTGAGCCACCGCGAGCGCCAATGGCGGTGGCCGTG
CTGCTGGCCGCCATCCTGGCGCTGTGCCCGCTCCCCCTTTCCCTCGCGTCCCCCTCTGCG
GCGGCGGCGGCCGACCGCATCACGCGCCTGCCGGGCCAGCCGCCGGTCAACTTCTCCATG
TACTCGGGCTACGTCACCGTCGACGCCCCCGCGGGCCGCGCCCTCTTCTACTGGCTCGTC
GAGGCCGCCGTCGCGAAGCCCAAGTCCGCCCCGCTCGTGCTCTGGCTCAACGGCGGGCCC
GGCTGCTCCTCCGTCGGCTACGGCGCCTCCGAGGAGCTCGGCGCCTTCCGGATCAACGCC
GACGGCAGGACGCTCTCCATCAACCCCTACTCCTGGAACAAAATGGCGAACGTGCTGTTC
CTGGACGCCCCCGCCGGCGTCGGGTACTCCTACTCCAACACCAGCTCCGATCTGCTCACC
CCCGGCGACAACAAGACAGCTCATGATTCGTACGCTTTCCTGGTGAATTGGCTGGAGAGG
TTTCCGCAGTACAAGTACCGTGATTTCTACATCGCCGGAGAGAGCTATGCAGGGCACTAT
GTCCCTCAGTTGTCTCAACTAGTGCATAGGAACAACAAGGGAGTGAGGAAGCCCATCCTG
AACTTCAAAGGCTTCATGGTCGGAAATGCGGTTATTGATGATTACCATGATTTCGTTGGA
ACGTTCGAGTATTGGTGGACGCACGGGCTGATCTCTGATGACACCTATCAGAAGCTGCAG
CTGGCTTGTGAGTTCGATTCAGCTGAGCACGAATCCGAGGCATGCAACAAGATTAATAAT
GTTGCTGAAGCTGAGGAAGGCCTGATTGACGCATACAGCATCTACACACCTACCTGTAAG
AAGACCTCACTTCATAGGCGAAGGCTAATCAAGGGCCGCAGGCCCTGGTTGCCAAGAGGA
TACGATCCCTGCACCGAACAGTACTCAACAAAGTACTACAATCTACCAGAAGTGCAGAAA
GCTTTTCGTGCCAATGTTACGGGAATACCGTATTCCTGGACCGCCTGCAGTGATGTCTTG
TCTGACCATTGGAAAGATTCACCGAGGTCCATGCTTCCTATTTACCGCGAACTGATTGCA
GCTGGCATAAGAATATGGGTCTTCAGTGGTGATGCCGATTCCGTAGTACCCCTCACTGCT
ACAAGATACTCCATTGATGCACTATATCTTCCGACCGTTACTAATTGGTATCCGTGGTAT
GATGAGGAAGAGGTTGCTGGTTGGTGCCAAGTGTACAAAGGTTTGACGTTGGTGACAATA
CGAGGCGCAGGGCATGAGGTTCCCCTTCATCGTCCACAACAAGCCTTGAAGCTTTTTGAG
CATTTCTTGCAAGATAAACCCATGCCTCGGCCTGCACATAGCATTCAGTCGTTTTAGAAT
TTTCTTCCACTTAAAATGGAAGATCAGCCCATGAAATCATGTTGTACAATTTCAAGTCCA
GTTACCAGATTTTCAGTTGAGCAGATTTTCTCTGTCCATTTGATTTCAGCTTGAGAAATG
GGAACAGAATCCCACTGAAGTGGGACAATTAGAGCTTTGTTTTTAGTTTTCATGAGCTCT
GGGGTGGCAGTGTAATTTGAATAATAATTCCATATTGGACACTATAAAATGTGACCATGT
CACTGTTATCTGTTAAAAAAAAAAAAAAAAACTGTNATCAAAGTTGCG

Homology of Contig U35_2081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g06490.1	472	protein\|OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi2g00260.1	470
Arabidopsis v10	AT3G07990.1	459	\| Symbols: SCPL27 \| serine carboxypeptidase-like 27 \| chr3:2552544-2554644 FORWARD LENGTH=459