barSeed - Barley Seed Development Database

Probe CUST_20167_PI390587928

Source Contig U35_2085

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20167_PI390587928	Hv_44K_v2	CCTTATTTCCTTGACGTTGTGTTGTCTGGTGTAGCCTGTGGAGATCTGTTCAAATAGAAA	1457	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.016	1.933	1.135	0.882	0.351	0.383
Raw	731.241	1091.768	571.105	681.520	97.978	115.438

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07022	1515	3e-25	1456 - 1515	100	60 / 60	plus	ABC07022
Harvest35	U35_2085	1517	3e-25	1458 - 1517	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_2085 1517 Hv_44K_v2
CCCACCCTCCCCGCAATAGCAAACACGCGGAAAAAAATGGAGGCATGAACGCGCCCTCCT
CCTCCTCCTCCTCCTCCATCCCCCCCTCCTCCTCCCTCGATCCCGTCGACGGCCCAGCGG
CCCCGCCCCCGCCCCCTGCCCCCCGGCGGGAACCTTGCTCGTAGGCGGACGTGAGGGGAG
CGGCGCGCGGCAGCGACGATGCCGTCGCACTCGGATCTGGACCGGCAGATCTCGCAGCTG
CGGGACTGCAAGTTCCTGCCGGACGCCGAGGTCAAGGCCCTCTGCGAGCAGGCCAAGGCG
ATCCTCATGGAGGAGTGGAACGTGCAGCCCGTGCGCTGCCCGGTCACCGTCTGCGGCGAC
ATCCACGGCCAGTTCTACGACCTCATCGAGCTATTCCGCATCGGCGGCGACACCCCCGAC
ACGAACTACCTTTTCATGGGCGACTACGTCGACCGTGGCTACTATTCAGTGGAGACTGTT
TCATTATTAGTGGCTCTCAAAGTTCGTTACAGAGACAGAATCACAATATTGAGAGGAAAT
CACGAGAGCCGACAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTACGGAAGTAC
GGAAACGCAAATGTCTGGAAGTACTTCACGGATTTGTTTGATTATTTGCCTCTCACAGCT
CTTATAGAAAACCAGGTATTTTGCCTCCATGGTGGTCTCTCTCCATCATTAGATACATTG
GACAACATTCGTTCTCTTGATCGCATACAAGAGGTCCCGCATGAAGGACCTATGTGTGAT
CTTTTGTGGTCTGATCCGGATGACCGATGCGGGTGGGGAATTTCACCAAGAGGTGCAGGC
TACACATTTGGACAAGATATAGCACAACAATTTAACCATACGAATGGTCTTAGTCTTATT
TCAAGGGCCCATCAACTTGTGATGGAAGGTTTCAATTGGGCACAGGAGAAGAATGTTGTC
ACAGTTTTCAGTGCGCCAAACTACTGTTACCGGTGTGGTAACATGGCTGCGATTCTCGAA
ATTGGGGAGAACATGGATCAGAACTTCCTCCAATTCGATCCAGCGCCGCGGCAAATCGAG
CCAGACACAACGCGCAAGACCCCCGACTACTTTTTGTAATCGTGGTGTTGACTTTTTTTT
AACTCTTCTTCTGCTGCTGCTGCTCCTCTCATCTGCAGCACAGCAGTGCCTGGCTGGATC
TGTAGATCTCTGTCCTTAGAAAATGGGATTCCTTGAGCTGAGTTGTGTACCCCCCTCTCA
TTCTTTTGTTTGGAGATTTTGGTTGCCGCTTCTCAGGACCTCATAGGACATGTTAAAAGT
ACATTGCATTGGTATTTTTTTTTGTATCTCCATTTTGTATTATTTCCGAGACAGAGAAGG
GAAGCTGCAATAGAACCGTCTCGTAACATATTTCATGCTCTTCTTCAGAAAAAAAAAAAA
AAATTTCAGGAATGTGACCTTATTTCCTTGACGTTGTGTTGTCTGGTGTAGCCTGTGGAG
ATCTGTTCAAATAGAAA

Homology of Contig U35_2085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37660.1	307	protein\|OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed
Brachypodium v1_2	Bradi1g37360.1	307
Arabidopsis v10	AT1G10430.1	306	\| Symbols: PP2A-2 \| protein phosphatase 2A-2 \| chr1:3428705-3430437 REVERSE LENGTH=306