barSeed - Barley Seed Development Database

Probe CUST_20166_PI390587928

Source Contig U35_2086

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20166_PI390587928	Hv_44K_v2	CTTTTTGTAATTGTGGTGTTGACCTCTTTAACTTACCACCAGTGTTGATGCTCCTCTCCT	1135	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361188	1697	2e-24	1139 - 1198	100	60 / 60	plus	ABC07022 ABC10800 ABC22482
MLOC	MLOC_12228.2	1276	2e-24	356 - 415	100	60 / 60	minus	ABC07022 ABC10800
MLOC	MLOC_12228.1	1115	2e-24	469 - 528	100	60 / 60	minus	ABC07022 ABC10800 ABC22482
JLOC1	JLOC1_8200.1	1118	8e-25	573 - 632	100	60 / 60	plus
Harvest21	ABC10800	1318	3e-25	1136 - 1195	100	60 / 60	plus	ABC10800
Harvest35	U35_2086	1272	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1272 bp)

>U35_2086 1272 Hv_44K_v2
CCAGGGCTGCAGGCGCAGGCGTACCTGCGAGTGTCGGAGGCGAAGGAAAATCTCGCTTCG
TATAAAACAAAGCGAAAAATGGAGGCATGAGCTGCTCCACACCTCCCCCTCCTCCGCTCC
GCTGATCCCCCGCAAACCCTAGCCCCGGCCTAGCCACTCCCTCCTCCTCGCCGGCGACCG
ACTGCGCGCCCGAGCCCGCCCCTGCCTCCGTGCCAGCGGCCGAGATGCCGCCGCACGGGG
ATCTGGACCGGCAGATCGCGCACCTGCGGGAGTGCAAGCACCTCCCGGAGGCGGAGGTCA
AGGGACTCTGCGAGCAGGCCAAGGCCATCCTCATGGAGGAGTGGAACGTGCAGCCCGTCC
GCTGCCCCGTCACCGTCTGCGGCGACATCCACGGCCAGTTCTACGACCTCATCGAGCTCT
TCCGCATCGGCGGCGAGTCGCCCGACACCAACTATCTCTTCATGGGCGACTACGTCGATC
GTGGCTACTATTCGGTGGAGACTGTTTCGCTGTTAGTGGCTTTGAAAGTTCGCTACAGAG
ACAGAATTACGATATTGAGAGGAAATCATGAGAGCAGACAAATCACGCAAGTATATGGCT
TCTATGATGAGTGCTTGCGAAAATATGGGAATGCAAATGTATGGAAGTACTTTACAGACT
TGTTTGATTATTTGCCTCTCACGGCTCTTATAGAAAACCAGGTGTTCTGCCTTCATGGTG
GTCTCTCTCCATCATTGGATACATTAGACAACATTCGTGCTCTTGATCGCATACAAGAGG
TTCCTCATGAAGGGCCCATGTGCGATCTTTTGTGGTCTGATCCAGACGATCGATGTGGAT
GGGGGATTTCACCAAGAGGAGCAGGTTATACGTTTGGGCAAGATATTGCACAACAGTTCA
ATCATACAAATGGTCTCTCTCTCATATCAAGGGCCCATCAACTTGTAATGGAAGGATTCA
ATTGGTGCCAGGATCAGAATGTTGTAACAGTCTTCAGTGCGCCAAACTACTGTTACCGGT
GTGGTAACATGGCTGCGATTCTCGAGATTGGGGAAAACATGGATCGTAACTTCCTCCAGT
TTGATCCAGCGCCTCGGCAAATCGAGCCTGACACAACACGCAAGACCCCCGACTACTTTT
TGTAATTGTGGTGTTGACCTCTTTAACTTACCACCAGTGTTGATGCTCCTCTCCTCCGCA
GCGTCGGAGTCTGTAGATCTTGTGTCCTTAGATACGGGCTCCATGGGGCCCGAGCTGTAT
TCAATCAATTCT

Homology of Contig U35_2086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g12580.1	308	protein\|OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed
Brachypodium v1_2	Bradi3g08090.1	307
Arabidopsis v10	AT1G10430.1	306	\| Symbols: PP2A-2 \| protein phosphatase 2A-2 \| chr1:3428705-3430437 REVERSE LENGTH=306