barSeed - Barley Seed Development Database

Probe CUST_20162_PI390587928

Source Contig U35_2090

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20162_PI390587928	Hv_44K_v2	GAAAATACCCTGGATGATTGATGGTATTACAGTGTCTTGTCTATTACATTGGCATCAATA	1467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364992	3957	2e-24	3879 - 3938	100	60 / 60	plus	ABC06281
MLOC	MLOC_10432.1	3587	2e-24	3481 - 3540	100	60 / 60	plus	ABC06281
JLOC1	JLOC1_6831.1	3580	8e-25	3481 - 3540	100	60 / 60	plus
Harvest21	ABC06281	1575	3e-25	1468 - 1527	100	60 / 60	plus	ABC06281
Harvest35	U35_2090	1569	3e-25	1468 - 1527	100	60 / 60	plus

Contig Sequence (1569 bp)

>U35_2090 1569 Hv_44K_v2
GGAGAGATCGAATTGCATATTCTACAGAAGAGAATGATGCCATCAGGAGTTCTGTTTCCG
AGGGAAGTGCCAACACATCCTACCTCCCAAATCAGCACAGCTATACTCCGGACCCTTCTC
AGAATATTTACCAGGTGCCTCAACAATATAATAATGCGCAAACCAATACATATCCAGAAG
CTTATCCACAGGCACCTAATAATAGAGCCAATGTTCCAAGCAATACATATCCAGAAGTTT
ACCCGCAATCACATAATGCAGCCTACTCAGCATATAGTGGATATCAACCTCAAGCCCCAA
CACAAATGTTTGTTCCGAAGAGCACACCAGTGGACAGCCAGCCAAGTCCGGCTCCATTAC
CGGTTCCACATCAAACAGTGAAGACATTTACTCCTGCAAACGTACCGAGTCTCAAAAACC
CAGAGCAATATCACCAAGCAAATACCTTGGGTTCCCAGCTCTACACGCCTCCTGCGAATT
CATCATATGCTCCTGGACCACCCGCCCAGTTCCATAGTGGACCTCCCACCACGTATCATC
AGCCTGCACCGCCGGCTCAATACCAGACTGGCCCACCCGTCCCTTCAGTTCCAGGAACAA
ACCCTAACCAGATGTTTACCCCTGCTGTTCCGACTAATTCAGCTTCTAGGTTCATACCGT
CAACCAATCAAGGTTTTGTTCAGCGGCCAGGCTTGAGCCCTGCACAGCCCTCAAGTCCAA
CACAGGCGCAACCACCAGCTCAGCCCACCGTTGCTCCTCCTGCACCTCCCCCCACTGTGC
AAACAGCTGATACATCGAATGTGTCTGCTGAGCTGAGACCTGTTATTGTAACACTGACCA
GACTATTTGATGAGACATCCAAAGCCTTGGGAGGCGCACCCGCTAAAAAACGTGAAATTG
AAGACAACTCAAAGAAGATTGGGGCGTTATTTGCGAAACTCAACACTGGAGATATATCTC
CAAATGTTTCATCAAAACTCATTCAGATGTGCAGTGCACTTGATAGTAGTGATTTTGCCA
CCGCGATGCAACTTCAGATTCTTCTGACGACCAGTGATTGGGACGAGTGCAACTTTTGGC
TCTCATCATTGAAGCGCATGATCAAGACAAGGCAAAGCTTCAGAGTGTAAATCTGCGTGG
CCTAGTGCCGCAGCTAGTTCTGTATACACCTTTTTCTGATTGTCAAAATTGTTAGTGTTA
GCAATTTGGAGGGTTGGCGTGCACAGAGATGTTATCCTGCTTCGTCTGTCAACTCTGCCG
GAGCTTCTTGTTGCTGAAAGTGGTCTTGTCATTCGGGTGACATTACGTTTTGACGACTCA
ATAGTTTTTCCATGTTCCTTTGCAAGAGGATGCGAGTCCTTTGGGGGTGTTGTTGGTTTT
GGAAATTATAAGTTGTAAGAGGTTACTTAGTCTGTCATACTAGCTGGTCCATTTTCCGTA
CCCTTGAATTAATCAGTCTGGACCTTTGAAAATACCCTGGATGATTGATGGTATTACAGT
GTCTTGTCTATTACATTGGCATCAATATATATATATTAATAAACTCAAAAAAAAAAAAAA
AAAAAAAAA

Homology of Contig U35_2090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46370.1	1128	1e-125	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g19210.1	1121	6e-163
Arabidopsis v10	AT3G63460.1	1104	6e-60	transducin family protein / WD-40 repeat family protein \| chr3:23431009-23437241 REVERSE LENGTH=1104