barSeed - Barley Seed Development Database

Probe CUST_2011_PI390587928

Source Contig U35_22795

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2011_PI390587928	Hv_44K_v2	CAGCTCCACCCGCGCGATCCCATCTGCCACCCGGGCTTGCACAGCCTGCGCTCCCTGCTG	0	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49107.1	650	2e-24	505 - 564	100	60 / 60	minus	None
MLOC	AK358255	1715	7e-23	77 - 133	100	57 / 57	plus	ABC24637
MLOC	MLOC_7232.1	155	3e-21	102 - 155	100	54 / 54	plus	None
JLOC1	JLOC1_31461.1	688	8e-25	505 - 564	100	60 / 60	minus
Harvest21	ABC18048	330	3e-25	1 - 60	100	60 / 60	plus
Harvest35	U35_22795	330	3e-25	1 - 60	100	60 / 60	plus

Contig Sequence (330 bp)

>U35_22795 330 Hv_44K_v2
CAGCTCCACCCGCGCGATCCCATCTGCCACCCGGGCTTGCACAGCCTGCGCTCCCTGCTG
CGCTCCCTGCTAGCCCTCCTCCCAAGGTGGAGATGGCCAACGGCGGCAAGGTCGTCCACA
CGCCCCACTCAGCGCCGCCTACGGTGCCATCGGCGCAAGTGTCGATCTAGGAGTCGGTGC
GCGCGTGCGGGGTGTGGGGGCGGGAGGTCGACAAGGCCGACCTGCGGCGCCGCGTCGTCA
TGCCCCTCTAGGCGCACCGGGCCATGGCCGCCGCCGTCGCCGAGAAGGACGAGGCCGCGG
GAGTGGCCATCGCGGCCGCTGTCAGGGAGG

Homology of Contig U35_22795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None