barSeed - Barley Seed Development Database

Probe CUST_20115_PI390587928

Source Contig U35_43108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20115_PI390587928	Hv_44K_v2	GGAGGCTGCTCTTTGACTGCGTGAATGAAGTATTAAGTGTGAAGTGCGCATACTACTTCA	619	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63062.3	2929	2e-24	2458 - 2517	100	60 / 60	plus	ABC39346
MLOC	MLOC_63062.1	3597	2e-24	2998 - 3057	100	60 / 60	plus	ABC39346
MLOC	MLOC_63062.2	3462	2e-24	2757 - 2816	100	60 / 60	plus	ABC39346
JLOC1	JLOC1_41299.2	3490	8e-25	2745 - 2804	100	60 / 60	plus
JLOC1	JLOC1_41299.1	3548	8e-25	2803 - 2862	100	60 / 60	plus
Harvest21	ABC39345	679	3e-25	620 - 679	100	60 / 60	plus
Harvest35	U35_43108	679	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_43108 679 Hv_44K_v2
TTGGATGATACGGCATCAGCCTGTGACACATCCAGCATTGCATCTACTGATTATGATAGG
GACTCCATACAGTCTTCAAAGGATGGAAAAGACAAATTCCCCTGGACAGATCTTGTATCA
AAAGATGATCAGTCATCTCAATCTGTGAAGTATGATAATGATTCCATCGATCAAGTGGAG
TTAGAGCATCTGCACTTAAGCCCCCATTCTACATGGGAAGCTTCTCTTTCAACAGAAACC
TGCAGCTCTGCAGAGAGCCGAACAAATGCAAATGAATCAAGGTTATTTAGTTCAACAGAA
GGGGCAGCAACATCTGGTTCGACACACTATGGTAGGGTCCTAGAAGTGGAGGCTTTATCA
GAATATTCTGATACAGCCTCATCAATCACAGCGACTTTAGCCGAAATAATACATTCATCA
GAAAGCAGCAGCTCATGTCGTATGGAGATAAAGTTCTTAAGAGAAATACTGAATGCTATT
TCTGTCAGAGATCATGCTTGCTCTTACCTTGAGCGATTTGATAGCTCAGATATCCTGGAT
CCACATCTGTTTGAAGAACTAAATGGCAATTTTAGGCTGCCAGTGGGTGAAGAAGAGAGA
AAATCTTTCGGAATGATTCGGAGGCTGCTCTTTGACTGCGTGAATGAAGTATTAAGTGTG
AAGTGCGCATACTACTTCA

Homology of Contig U35_43108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61620.1	887	2e-74	protein\|expressed protein
Brachypodium v1_2	Bradi1g02980.1	871	2e-87
Arabidopsis v10	None