- Probe CUST_20107_PI390587928
- Source Contig U35_31136
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20107_PI390587928 | Hv_44K_v2 | TGGCAGTCTGTCATTAGTGCCTATGTTAATCCATGAGCAATTTTGTAACATTAGTCTTGC | 613 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80077.1 | 2355 | 2e-24 | 1660 - 1719 | 100 | 60 / 60 | plus | ABC18237 ABC47436 |
| MLOC | MLOC_80078.1 | 1478 | 2e-24 | 401 - 460 | 100 | 60 / 60 | minus | ABC47436 |
| MLOC | MLOC_80077.2 | 2182 | 2e-24 | 416 - 475 | 100 | 60 / 60 | minus | ABC18237 ABC47436 |
| MLOC | MLOC_80078.3 | 1655 | 2e-24 | 385 - 444 | 100 | 60 / 60 | minus | ABC18237 ABC47436 |
| MLOC | MLOC_80078.2 | 1678 | 2e-24 | 393 - 452 | 100 | 60 / 60 | minus | ABC18237 ABC47436 |
| JLOC1 | JLOC1_53328.18 | 2967 | 8e-25 | 2413 - 2472 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.16 | 2242 | 8e-25 | 1688 - 1747 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.15 | 3472 | 8e-25 | 2918 - 2977 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.13 | 2231 | 8e-25 | 1677 - 1736 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.10 | 3439 | 8e-25 | 2885 - 2944 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.5 | 2859 | 8e-25 | 2305 - 2364 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.4 | 2933 | 8e-25 | 2379 - 2438 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.3 | 1729 | 8e-25 | 1175 - 1234 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.2 | 1720 | 8e-25 | 1166 - 1225 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_53328.1 | 2942 | 8e-25 | 2388 - 2447 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31281 | 685 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31136 | 685 | 3e-25 | 614 - 673 | 100 | 60 / 60 | plus |
Contig Sequence (685 bp)
>U35_31136 685 Hv_44K_v2 GGCGGCCTCTTCAGCGGCGTCGCCCGACGGGCTCCATGCACGTGTGATGGATGCTGGTTC CTAAGGTGAGCGCGATGCCGAGGAGAGATGGCATCGCGGACGGCATCCAAGGACATCATC ACGCTCAACGGCTCAGCCGCCATCGTCATCAAGTTCTTTGATTACGCAGCGAACAGGTGT GCGATGGGCCGGCAAACAGCAGTGCCGTCTCTATCCCCGATGCTGCATCTTGGTGGGGCT AATGGCCCTGCGCGCGGTGCGCCCTGGGCGGTGCGGACTGCAACTGCGCGTAGGGCCGCC ACAGCTGCTTTCTCAAGGCGGCGTGCGGACTGCCTGAAAAACAGTGACTTTGTTATCCAA GACCAATGATTATGCTCTTGGGTCAATATTCATGCTAATCATCATTTATTAAGCAACTGC ACCTACAATATTAATAATGTCATCCGGTGGAATCATGTGTTGCTGCTAATCAGGTCTTCT ACTTGCTTTCTTTTGCGGGAACTCTAGATTGACAACACTGCCTTAAATTTGTCTCTATAA TTGGTTCATATGTATTTAATAGATCATGCGTGTATCGAGAGTAAATTCCTTCTCATTCCC TGTACCATGGTGTTGGCAGTCTGTCATTAGTGCCTATGTTAATCCATGAGCAATTTTGTA ACATTAGTCTTGCTATTTTTTTATG
Homology of Contig U35_31136 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |