- Probe CUST_20079_PI390587928
- Source Contig U35_43124
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20079_PI390587928 | Hv_44K_v2 | AAGCGGTTGCACCGGTTGCCCTCCCCCTTCGCCGGCACAACGGTAAATATATGGTTCCCG | 59 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.125 | 1.462 | 1.581 | 1.098 | 0.531 | 0.516 |
| Raw | 463.660 | 941.364 | 886.801 | 936.173 | 163.840 | 174.452 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC39391 | 290 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_43124 | 290 | 3e-25 | 60 - 119 | 100 | 60 / 60 | minus |
Contig Sequence (290 bp)
>U35_43124 290 Hv_44K_v2 GTTGCGTAAGGGTTGAGGTGGAGGCCCAACGTTCGAACCAGGGGGGGGCCTTGCCGGGCC GGGAACCATATATTTACCGTTGTGCCGGCGAAGGGGGAGGGCAACCGGTGCAACCGCTTG TGCCCCACCGGGGTGCCGGGGGCCAAGGGCAAGCCGTCCAAGTAAAACTTGTGGCGGTTC ACCCGGTGGCCCAGGGGCACGTGCTTCTGGATTCTTACCACGTTGAAAGGGCGGGCCCCC GGCGGGCGGCGGAGGTTGATCCAGTACCCCTTTTTCTCCGGCTTTGGGGC
Homology of Contig U35_43124 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |