barSeed - Barley Seed Development Database

Probe CUST_20075_PI390587928

Source Contig U35_43128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20075_PI390587928	Hv_44K_v2	GGTTCAATAGGACTAGCCATATTACTCCAAATGCAGTTGTCTCTTGTCCCGACAAGAATG	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364369	2154	7e-23	655 - 714	98	59 / 60	plus	ABC24690
MLOC	MLOC_58851.2	1759	7e-23	1129 - 1188	98	59 / 60	minus	ABC24690
MLOC	MLOC_58851.1	2870	7e-23	2232 - 2291	98	59 / 60	minus	ABC22838 ABC24690
JLOC1	JLOC1_38257.1	2873	4e-23	545 - 604	98	59 / 60	plus
Harvest21	ABC39405	505	3e-25	446 - 505	100	60 / 60	plus
Harvest35	U35_43128	505	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_43128 505 Hv_44K_v2
CAGCGCGAGGCCGTTCCCATGTCTCCCTCCGCGCCGCCGGCCGCCCTCCGCCTCGCGAGC
CCGCCCAAAGCTCTCCTCCCGGCCCTCCCACCGTCCTCCAGTCGCTCCCCCCGCCTCTCC
ATGTCGACCCCGTCTCGTCCCCGCGCCACGCCTCTCGCCGCGGCCGGCGGGGGCGGCGCG
GCCCCTTCCCTCCTCGCCGCCGACCCGGCCCACCGCGACTCGGTCATCCTCGCGGCGCGC
GGTGCCATGACGAACTGCCTCGGCGAGACCCACCTCGACCTCGTCGTCCCCGGGCTCCGC
CTCGCCGCCAAGGGCAAGGTTAGGGACGTCTACGAGAGCGGGGAGCACCTGGTGCTGGTG
ACCACCGACCGCCAGAGCGCGTTCGACCGTGTCCTTGCCTCCATCCCGTTCAAAGGGCAG
GTTCTTAACGAGACAAGCCTTTGGTGGTTCAATAGGACTAGCCATATTACTCCAAATGCA
GTTGTCTCTTGTCCCGACAAGAATG

Homology of Contig U35_43128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29190.2	395	4e-55	protein\|phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g32600.1	396	4e-60
Arabidopsis v10	None