barSeed - Barley Seed Development Database

Probe CUST_20050_PI390587928

Source Contig U35_49864

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20050_PI390587928	Hv_44K_v2	ATTCTGCTGAATTTACCGGTGAAAGTTTTGCGATGCTCTCTGGTACAAGTATGGCTGCAC	463	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368100	2958	2e-24	2023 - 2082	100	60 / 60	plus	ABC20303
MLOC	MLOC_74653.2	2111	2e-24	459 - 518	100	60 / 60	minus	ABC20303
MLOC	MLOC_74653.1	2582	2e-24	930 - 989	100	60 / 60	minus	ABC20303
JLOC1	JLOC1_49770.1	2582	8e-25	1594 - 1653	100	60 / 60	plus
Harvest21	ABC51810	647	3e-25	464 - 523	100	60 / 60	plus
Harvest35	U35_49864	647	3e-25	464 - 523	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_49864 647 Hv_44K_v2
GATCTGATAAGGGGGAAGATATTGGTCTGCAGCTATTCCATAAGATTTGTACTTGGCCTC
TCTTCTGTGAAGCAAGCTTTAGATACAGCAAAGAATGTCAGTGCTGCAGGAGTTATATTT
TACTTGGACCCTTTTGTCCTTGGTTTCCAGCTGAACCCAACTCCAATGGATATACCTGGA
CTTATAATACCATCGTCTGATGACTCTAAGATATTCCTAAGTTATTACAACGATTCGCTT
GTACGAGATGGCACGTCAGACAGAGTTGTCAACTTCGGTGCAGTTGCGAAAATACTAGGA
GGCCTGAAGCCAAATTATGGTAGCTCGGCACCAAAAGTGATGTTTTATTCTGCTAGGGGG
CCTGATCCTGAGGATAATACATTGGCCAATGCTGATATCTTGAAACCAAATGTGGTAGCA
CCTGGCAGTTCCATTTGGGGTGCTTGGAGTTCGCGTGGACTGGATTCTGCTGAATTTACC
GGTGAAAGTTTTGCGATGCTCTCTGGTACAAGTATGGCTGCACCACACATTGCTGGCCTT
GCGGCTCTAATCAAGCAGAAGTTTCCTTCTTTTAGCCCGGCGGCTATAGGTTCAGCGCTG
TCTACTACGACAACTCTCAGTGACAGGGAAGGGAAGCCAATCATGTC

Homology of Contig U35_49864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g56320.1	850	2e-128	protein\|OsSub4 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi2g51130.1	857	4e-130
Arabidopsis v10	AT4G20430.1	856	4e-102	Subtilase family protein \| chr4:11017656-11021105 REVERSE LENGTH=856