barSeed - Barley Seed Development Database

Probe CUST_20047_PI390587928

Source Contig U35_49868

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20047_PI390587928	Hv_44K_v2	TCAACTTCTCAGTGTTCTACTATGAAATCCTGAACTCTCCAGACCGTGCTTGCAACCTTG	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354203	1758	2e-24	616 - 675	100	60 / 60	plus	ABC01542 ABC01543 ABC02243 ABC47643
MLOC	MLOC_69312.3	1850	2e-24	752 - 811	100	60 / 60	plus	ABC01542 ABC47643 ABC49984
MLOC	MLOC_69312.1	1397	2e-24	652 - 711	100	60 / 60	plus	ABC01542 ABC47643
MLOC	MLOC_69312.2	1402	2e-24	652 - 711	100	60 / 60	plus	ABC01542 ABC01543 ABC47643 ABC49984
JLOC1	JLOC1_45912.1	1433	8e-25	652 - 711	100	60 / 60	plus
Harvest21	ABC01545	749	3e-25	374 - 433	100	60 / 60	plus
Harvest21	ABC01542	1429	3e-25	700 - 759	100	60 / 60	plus	ABC01542
Harvest35	U35_49868	595	3e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_14382	1448	3e-25	685 - 744	100	60 / 60	plus
Harvest35	U35_14381	1200	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_49868 595 Hv_44K_v2
CTTCGATCAAGGAGTACCGTACCAGGATTGAAACTGAGCTCAGCAAGATCTGCGATGGCA
TCCTCAAGCTTCTGGACTCCCACCTCGTCCCCTCTGCCACTGCAGCAGAGTCCAAGGTGT
TCTATCTGAAAATGAAGGGTGATTACCACAGGTATTTACTTGCAGCATACAGAGAATTAG
ACCAGTCCATAGTTGTTGTACACAAATTTACTTTATACTCACTGATTGCGAAACCATAGG
TACCTTGCGGAGTTCAAGGCCGGTGCTGAGAGGAAAGAAGCAGCTGAGAACACTCTTGTT
GCGTACAAGTCAGCCCAGGACATTGCTCTTGCTGACTTGCCTACCACTCACCCGATTAGG
CTTGGGCTTGCACTCAACTTCTCAGTGTTCTACTATGAAATCCTGAACTCTCCAGACCGT
GCTTGCAACCTTGCCAAGCAGGCATTTGATGAAGCTATTGCTGAGCTGGACTCCCTCGGC
GAGGAATCCTACAAGGACAGCACCTTGATCATGCAACTTCTTCGTGACAACTTGACCCTC
TGGACCTCCGATAACGCAGAGGAGGGTGGTGATGAGATCAAGGAAGCTGCCTCAA

Homology of Contig U35_49868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36974.4	263	6e-74	protein\|14-3-3 protein, putative, expressed
Brachypodium v1_2	Bradi4g16640.1	267	2e-74
Arabidopsis v10	AT1G78300.1	259	5e-71	\| Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA \| general regulatory factor 2 \| chr1:29461883-29463052 FORWARD LENGTH=259