- Probe CUST_20042_PI390587928
- Source Contig U35_37893
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_20042_PI390587928 | Hv_44K_v2 | TGCATCAAGCTCCATCCATGATTTTACACTCTAGAGGAGAGAACTGCTGTAGCCAGCTTT | 28 | GeneList: darkmagenta MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 4.088 | 1.991 | 1.117 | 0.729 | 0.446 | 0.372 |
Raw | 67.686 | 41.059 | 25.716 | 23.002 | 4.418 | 4.225 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_816.1 | 3577 | 7e-23 | 628 - 688 | 98 | 60 / 61 | minus | ABC01361 ABC33640 |
Harvest21 | ABC33640 | 519 | 3e-25 | 29 - 88 | 100 | 60 / 60 | minus | ABC33640 |
Harvest35 | U35_37893 | 519 | 3e-25 | 29 - 88 | 100 | 60 / 60 | minus |
Contig Sequence (519 bp)
>U35_37893 519 Hv_44K_v2 CCGGGGCTGCAGGAGAAAGGTCGCTACCAAAGCTGGCTACAGCAGTTCTCTCCTCTAGAG TGTAAAATCATGGATGGAGCTTGATGCAGCAGCCACTAGATTCCTACCTTTAGTGCTTGC CAATGGATGGTCCTTCTTTCCCTTCCGATACAGAAAAACGATTTATTGGCCTTCTCACTA GTGGTCCCAATCCTTGACTCCAGTATGTATCTCATATCAGGTGCCCTACTCCTTTTTATA GATAGATGCGTCTGGAGACTGATAACGCTTGTGATCTCTTTCTTTTTCTATTGGTTAAGG AATGCTAATAATGAAATAACTGATAGAGCTGCTAATGGATTTCATGTCCCTCTTGATCTC CATTCTCATTGGACGTTTTGACTTAGTAGCTATGTGATTTTTCACTTTGATCCGCGTACT TTATTTCTTCTTTCACTACTTCCTTTCGTCTCTCTTCTTCGGGCCCTGTATTGGGAACCA TTCTTTTCCCGGTTCCCATTAGAAAAAAAAAAAAAAAAA
Homology of Contig U35_37893 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |