- Probe CUST_20039_PI390587928
- Source Contig U35_37896
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20039_PI390587928 | Hv_44K_v2 | CCGTTCATTTCCCCAACAGTGAATAAGTGATGGTGTGTAAACATGTAGGCGGTGTGTTTC | 572 | GeneList: lightcyan1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.240 | 0.214 | 0.862 | 2.651 | 1.661 | 2.716 |
| Raw | 2.557 | 4.617 | 24.792 | 113.728 | 27.749 | 48.219 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4424.8 | 844 | 2e-24 | 633 - 692 | 100 | 60 / 60 | plus | ABC06240 ABC06241 |
| MLOC | MLOC_4424.7 | 2116 | 2e-24 | 1992 - 2051 | 100 | 60 / 60 | plus | ABC06240 ABC06241 |
| MLOC | MLOC_4424.2 | 2129 | 2e-24 | 2005 - 2064 | 100 | 60 / 60 | plus | ABC06240 ABC06241 ABC53017 |
| MLOC | MLOC_4424.3 | 3099 | 2e-24 | 2975 - 3034 | 100 | 60 / 60 | plus | ABC06240 ABC06241 ABC53017 |
| JLOC1 | JLOC1_2752.3 | 2100 | 8e-25 | 1873 - 1932 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2752.2 | 2151 | 8e-25 | 1924 - 1983 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2752.1 | 3029 | 8e-25 | 2802 - 2861 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37896 | 692 | 3e-25 | 573 - 632 | 100 | 60 / 60 | plus |
Contig Sequence (692 bp)
>U35_37896 692 Hv_44K_v2 TGGGGGTTGTCTATCAACAACCATTGGACAGGAGTTTAATCACTTTACTTCAACGGAATC AACAAGCCCAAGTACCCGGAATTATCTTCCAGGAATTAATGATTCTCAAGGCAGTGGCTT GCGGTCATATTACCCCGTTCAAAGGAAATGGTCTCTTGGGCTCCAGTCTGGAGCTCACCC TCGTGCGATAATGATTGAAGTTCTAAAGGCACTTAATGAATTAAATGTCCGTTGGAAGAA CAATGGAGACTACAACATGAAATGCAGGTGGTGCCCTGGGTTTCCTCAGTTCAGTGATAT GTTGTTAGATGCCAACCACAGCTTTGTTGATGATTCTACCATGATGGATAATGGTGATGC TAATAGGAGGCTACCTGCTGTGATCAAGTTCGAAATTCAGCTTTACAAGACCAAGGATGA CAAGTACCTGCTAGATATGCAGAGAGTTACTGGATCTCAACTCCTCTTCCTGGAATTTTG TGCGGCCTTCCTTACCAACCTTAGGGTTCTATAGTGCTTGTTCTAGTTGAGTGGAGAATA GCAAAACTTATGACTGTCCTGTATGTGTGGTGCCGTTCATTTCCCCAACAGTGAATAAGT GATGGTGTGTAAACATGTAGGCGGTGTGTTTCATCTTAGTTTTACCGAGTCCCTGACAGC GAACCATGTTGTTTGAGTGACTAGTCCTGTGT
Homology of Contig U35_37896 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g37800.1 | 510 | 7e-76 | protein|CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| Brachypodium v1_2 | Bradi1g65630.1 | 510 | 5e-87 | |
| Arabidopsis v10 | None |