barSeed - Barley Seed Development Database

Probe CUST_20031_PI390587928

Source Contig U35_49883

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20031_PI390587928	Hv_44K_v2	TTCATGTTTTAACTTGGATGATCTTGTTGAAGGTTTTGGGGGCTTACCCAACCTCGGTGT	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6958.4	745	2e-24	95 - 154	100	60 / 60	plus	ABC03470
Harvest21	ABC51836	658	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_49883	658	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (658 bp)

>U35_49883 658 Hv_44K_v2
AGGGTTTCCTCCGCTTCGCTCTCACAGTGCAGAATGCCTCGCTATGATGAGCGTGATCGT
TACGGCGGCAATACAAGGCTGTACGTGGGTCGTCTTCCCTCGCGCACCCGCACAAGGGAC
CTTGAAGACCTCTTCGGCAGATATGGGAGGTAAGCAAGCAGAATTTTTCTCAGTCAGAGC
TACTTTTGCCTTCTGATGGTTGGCAAGGCCCTGAACAATTATACTAGTTTCTTCTTATAC
AATTGATGGATTTTGATGGGTTTCATATGTCACCTTTGCAAATCATGTGTGATTTAGCTT
GTAGTCAAATAGGTCTGTGCTTTGCTCTATTGTCTGAAGACATGGTAGAGCAGAAATTGA
GACACGTTTTTTTGATTTCTTGCACCCAATGACATTGTCACCCACACAGTTACTTTGAGG
CAATGGCTCTCCATACGGGTTACTAAAGACAGCACCCTGTGCTCTCTGAACATTGTTCTC
CCCCATTGTTTTTCGTACCATCACATGTATCCACAAGCCCTTCATGTTTTAACTTGGATG
ATCTTGTTGAAGGTTTTGGGGGCTTACCCAACCTCGGTGTCCATGGTGGATTGGTGGGAG
GGTGCCCTTGGTGGAATTGGTGGCTATTCTCGCAAAGTTTCTAGCAGACTTTGGCGAT

Homology of Contig U35_49883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None