barSeed - Barley Seed Development Database

Probe CUST_20030_PI390587928

Source Contig U35_49884

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20030_PI390587928	Hv_44K_v2	AGATATTCCTTGCACAGAAAATGATGATCTACAAGTGCAACCTTGCTGGCAAGCCTGTGG	391	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79331.2	1805	2e-24	751 - 810	100	60 / 60	plus	ABC03010
MLOC	MLOC_79331.1	2389	2e-24	1335 - 1394	100	60 / 60	plus	ABC03010 ABC06989
JLOC1	JLOC1_52847.1	2299	8e-25	1135 - 1194	100	60 / 60	plus
Harvest21	ABC37787	656	3e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC03012	1463	3e-25	392 - 451	100	60 / 60	plus
Harvest21	ABC03011	2067	3e-25	1007 - 1066	100	60 / 60	plus
Harvest35	U35_49884	662	3e-25	392 - 451	100	60 / 60	plus
Harvest35	U35_42243	656	3e-25	421 - 480	100	60 / 60	plus
Harvest35	U35_15328	2110	3e-25	1050 - 1109	100	60 / 60	plus

Contig Sequence (662 bp)

>U35_49884 662 Hv_44K_v2
CTGCTCCTGTAGTAAAAAATACACAACTTGTTCTCTTCTTCGTGGTTTCCTTAATGAGCA
CATTTGGTTAAACCTTGGGACAGTTAGATAAGCAAGTTTTGTCTCTTCTTTTCCTGCATC
TCCCCTGATAATGTTTTTTTCTTCCTGGTACTTGTGCAATTGTTCAGGTTACTTGGCTTT
GTTTGACTGCCATGTTGACAAAATCTACTGTATATATATGCATATGTGCTTGCCTGTGAC
CATGTTAGTTATCGCGTTATGTATCTGACTTCTTTCTTGAATCTGTAGGTTGAAAACCAA
GAGGGCATTGTAAACTTTGATGACATTCTGAGGGAAACCGATGCCTTTATGGTTGCTAGA
GGTGATCTTGGAATGGAGATTCCAGTCGAGAAGATATTCCTTGCACAGAAAATGATGATC
TACAAGTGCAACCTTGCTGGCAAGCCTGTGGTCACAGCGACACAGATGCTTGAGTCCATG
ATCAAGTCCCCCAGGCCAACTCGCGCTGAGGCTACCGACGTTGCAAATGCTGTGCTTGAT
GGAACTGATTGTGTCATGCTCAGTGGTGAAAGTGCTGCTGGAGCATACCCCGAGGTGGCT
GTGAAGATCATGGCTCGCATCTGTGTGGAGGCGGAGTCTTCCCTGGACACGACGCCGTCT
TC

Homology of Contig U35_49884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58110.1	512	1e-72	protein\|pyruvate kinase, putative, expressed
Brachypodium v1_2	Bradi5g26140.1	515	4e-73
Arabidopsis v10	AT5G08570.1	510	2e-71	Pyruvate kinase family protein \| chr5:2778433-2780300 FORWARD LENGTH=510