barSeed - Barley Seed Development Database

Probe CUST_20029_PI390587928

Source Contig U35_49885

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20029_PI390587928	Hv_44K_v2	AGTACAGTACAAGGCCGTTCCTGAATGATTACCTCACCACGGGCATCCTGCAGCTCGAGG	513	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.993	5.624	1.910	0.414	0.326	0.223
Raw	482.528	260.666	89.380	26.856	8.367	6.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31922.1	1377	2e-24	533 - 592	100	60 / 60	plus	None
Harvest21	ABC51837	614	3e-25	514 - 573	100	60 / 60	plus
Harvest35	U35_49885	614	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_49885 614 Hv_44K_v2
CAAAATCTAGGGCGGCGGCGGCTGCTTTATTCCCGATGCCGATCGCCATGGACACCGGAG
GCGCTCCGGAGGAGGAGACCGTCGTCCTCCCCCATTGGGTGGTTCTGCACCGCAGGGGCA
GCACCCGCTGCCACAACAGCCTAGACGCTGCTCGTGTGGCTGTCGACAAGAACAAGACCG
CCGCTCCACTCGACATGGACGGAGGCACCTCCTGCTACGTGTCCTTCACCCTCGCGCCTC
CTCAAAAAGGGATCTCCTGCCTCAACCTCCACTTGCCGGAGAAACCTCCACTGACACCAG
GCATCCCGCCGACCGCCTATTCCTTCCTCCGGGCAACCGACAACAACCTCGTCCTCTTCG
ACATCTCCAACCCGGAGAAAAAAGACAAGAAACTCGTCCTCGTCGACATCTCCAACCCGG
ACCGGAGTTGCTACCGGCAGCCCCCGGCAGATCTGTTTGTCTACAAGGCCGGCAATCCTC
GCCCCTCGGTGCAGTGTCTCCCTCCCTACCTCGAGTACAGTACAAGGCCGTTCCTGAATG
ATTACCTCACCACGGGCATCCTGCAGCTCGAGGGGGACCGCTTCGTCGTCGCCGACCTCA
ATGTCTATCACAAA

Homology of Contig U35_49885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None