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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_20026_PI390587928Hv_44K_v2AAAGTAGTGCTGATTGATCATCATCCCCTGAGACTGGGACTTAGACCTTTGCTGTAGCTT160GeneList: tan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1300.5591.7202.2950.9261.073
Raw 308.4702186.5415640.26311833.3301675.7302111.973



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_66503.123549e-222227 - 22849857 / 58plus ABC10196 ABC51843
MLOCMLOC_66503.223559e-222131 - 21889857 / 58plus ABC10196 ABC51843
JLOC1JLOC1_43829.219875e-221716 - 17739857 / 58plus
JLOC1JLOC1_43829.123995e-222128 - 21859857 / 58plus
Harvest21ABC518433773e-25161 - 22010060 / 60minusABC51843
Harvest21ABC1019613342e-221106 - 11639857 / 58plusABC10196
Harvest35U35_498893773e-25161 - 22010060 / 60minus
Harvest35U35_1815621292e-221899 - 19569857 / 58plus



Contig Sequence (377 bp)

>U35_49889 377 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAAATTAACCAAGGGACTTTTAATAATACAATTTTAATACCC
TAAAAAAATCTTAATACCCTTATTTATGGTTAAAAGAGATTTCCTAGACAAAAAAAACAG
AAAAGAAGGGGGGAAACATTTTGTACAGGGGGCCCAAAGGAAGCTACAGCAAAGGTCTAA
GTCCCAGTCTCAGGGGATGATGATCAATCAGCACTACTTTTTTTTTACCGCCTACAATAT
AAAAGGAACCGCAATGCAATGTCCTACAGGAAAGGCTAATAATGCTATTTTTACTACACT
GGGCCGGAGCCGAGTTTTTGGGGACCCCCTTGTTCGTCAACCCCGATTTTTAGGGCTGGA
ACCTCGTTGAGGGCCCT



Homology of Contig U35_49889 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None