barSeed - Barley Seed Development Database

Probe CUST_20022_PI390587928

Source Contig U35_49897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20022_PI390587928	Hv_44K_v2	CTTCAAGAGTACTGAAGAGCTTCCTTGTTCTCGGGAAAAATGATCGTTAGCTGAAACGCG	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55372.3	1072	2e-24	946 - 1005	100	60 / 60	plus	ABC05656 ABC46807
MLOC	MLOC_55372.2	1349	2e-24	1246 - 1305	100	60 / 60	plus	ABC05656 ABC46807
JLOC1	JLOC1_35709.2	1069	8e-25	944 - 1003	100	60 / 60	plus
JLOC1	JLOC1_35709.1	1195	8e-25	1070 - 1129	100	60 / 60	plus
Harvest21	ABC51855	406	3e-25	293 - 352	100	60 / 60	plus
Harvest21	ABC46807	412	3e-25	83 - 142	100	60 / 60	minus	ABC46807
Harvest21	ABC05656	1041	3e-25	905 - 964	100	60 / 60	plus	ABC05656
Harvest35	U35_49897	406	3e-25	293 - 352	100	60 / 60	plus
Harvest35	U35_16773	1046	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_49897 406 Hv_44K_v2
AGCGCAGCTCTGTAGAGTGAGTGGAAATGGGCGAGGAGGCCAATTGCAACGCCGTGATGG
AGGCCGCCAACGGCAACGGCAACGGCAAGGTCAAGGAGAACGGCCACGCCGTTGTGGCCA
TGCCGGACGTCAAGGCCGACGACGCCGTGGTGGCGCCCGCCGACCCCCGGCTGCAGGGCA
TCTCCGACGCCATCCGCGTCGTCCCGCACTTCCCCAAGCCAGGCATCATGTTCAACGACA
TCACGGTACGTGAATGGATGGGTGTTAGTAGTCTTTGTAGGCTGAGTAGTTTCTTCAAGA
GTACTGAAGAGCTTCCTTGTTCTCGGGAAAAATGATCGTTAGCTGAAACGCGAGTCCTGT
CGTTCTTCCATTGTTATTGGTTATTAATTATTAATTGTGTGGTTTT

Homology of Contig U35_49897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None