- Probe CUST_20017_PI390587928
- Source Contig U35_8802
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20017_PI390587928 | Hv_44K_v2 | TCTCGGTGGTGGGAACGAGGTGGAGGCCCTGTACGAGCTGTACAAGAAAATCAGCTGCTC | 367 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.877 | 1.511 | 1.157 | 0.802 | 0.406 | 0.469 |
| Raw | 67.606 | 84.881 | 59.014 | 63.776 | 10.984 | 13.578 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC17253 | 426 | 1e-24 | 368 - 426 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_8802 | 427 | 3e-25 | 368 - 427 | 100 | 60 / 60 | plus |
Contig Sequence (427 bp)
>U35_8802 427 Hv_44K_v2 CGGAGACGCCAATCTGCCAGTTCACCAAGAACTCCGGCGGCCGCGCGCCGGTACGTGACG TTCCCGGCGACCGGCACCCCGTCGATCGATGATTCGCTGCCAGCCGCAGCTGCCCAGCCC ATGGACCCCTCCCGCTCATCCAACACCCTCGTAGGGTCGAGAAGCTCTCTGACGCTCGGG GAACTCGCATGCATGGCATTGTTCCCGGTGCTCGCCGTGGTGGACGCGGTCGCCCTCGCC GCCGCGCACTGCTTCCAGAGGCGCCCGCCCGCCCTCCGCGCCCACGCGCGCCAGCGCCAG CGCCACCGAGCCAGCGGCCGCCTCACGTTCCGTGAGCTCGCCGACCTCGCCGACGAGTCA TGCTGCTTCTCGGTGGTGGGAACGAGGTGGAGGCCCTGTACGAGCTGTACAAGAAAATCA GCTGCTC
Homology of Contig U35_8802 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |