barSeed - Barley Seed Development Database

Probe CUST_20013_PI390587928

Source Contig U35_8807

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20013_PI390587928	Hv_44K_v2	AATAACAGCTCCGTTCGTCCGTCACATTCTCTTTGTTTCACCGGTGATCTGATCTTGAGT	73	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364918	2275	2e-24	121 - 180	100	60 / 60	plus	ABC08246
MLOC	MLOC_23467.1	505	2e-24	416 - 475	100	60 / 60	plus	None
JLOC1	JLOC1_16212.1	396	8e-25	226 - 285	100	60 / 60	plus
Harvest21	ABC17648	211	3e-25	74 - 133	100	60 / 60	plus
Harvest35	U35_8807	211	3e-25	74 - 133	100	60 / 60	plus

Contig Sequence (211 bp)

>U35_8807 211 Hv_44K_v2
GTAAATCTAGGTCCGGATTCGGATCCGTTTCCTCCCCATTTCCCACAACCCATTCCGACC
GGCGAACCCGTTCAATAACAGCTCCGTTCGTCCGTCACATTCTCTTTGTTTCACCGGTGA
TCTGATCTTGAGTCCAGCAGCGTCCGTCCCACGCGCGTGACCCGGCCCAGCAGCTCGTCG
TCGTCGTCGTCGTCGTCCACATGGCACTCAA

Homology of Contig U35_8807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None