barSeed - Barley Seed Development Database

Probe CUST_20008_PI390587928

Source Contig U35_8812

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20008_PI390587928	Hv_44K_v2	GTCGCACGAGCGAAAATAATGTCCAGTTATTCAATTTCTTTTTGCCATCTATGTGTGTAT	810	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.748	1.803	1.056	0.947	0.397	0.480
Raw	642.988	1078.895	535.102	781.851	110.992	147.368

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367691	1449	2e-24	1350 - 1409	100	60 / 60	plus	ABC17805
MLOC	MLOC_20076.1	1178	2e-24	20 - 79	100	60 / 60	minus	ABC17805
MLOC	MLOC_20076.2	1326	9e-22	1 - 55	100	55 / 55	minus	ABC17805
JLOC1	JLOC1_13926.1	1302	8e-25	1100 - 1159	100	60 / 60	plus
Harvest21	ABC17805	892	3e-25	811 - 870	100	60 / 60	plus	ABC17805
Harvest35	U35_8812	892	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (892 bp)

>U35_8812 892 Hv_44K_v2
GTCGAGGCTGATAGCAGGGCTGATAGTGGTGATGATTTATGGTCTGCTGTTCGAGAAGAT
TTATGGTCTGCTGTAGGGGAAGCTGGTGCAAACATTTACAAAAGAGGTGATTTCAAAGAA
TCGCAGATGGCAGATCTTGATGTCTATTTGTTGAAGAAAGTTGGACTCTTTCCGGATATT
CTAGAAAGGAAAGCATCACGCCACCTAGAAAAAGGAGATCATGTTTCCGCTCTTATTACT
GGAGAATTCTATACTAGAGATCAATTTCCTGGATTTGGAAGACCCTTTGTGTTCAACTCA
GAAGTTCAGAAAAGAGTTGGACGTACATCTGAGGCCAAAGAGTCAGCTCGAGTGGCTCTG
AAGTCACCATGGTGGACACTGGGCTGTAGATATGAAGAGGCAGCTGAATTAGCTGGGTGG
GAGGATGAGCAGATCGAGTTCATAAGAGAGAAGGTATCCGAGGAGGGCAAACAAGACGAT
CTGAAGAAAGGAAAAGCACCAGAGCAGGTGGTCCTTGACGAGGCGGCGTTTCTTATGGAT
CTAGCAACAGTTGACGGCAACTGGGACGAAGTCGTGGATCGGATCGCCGATTGCTACAGA
GAGGCTGGGATCCACGACATTGCGAAGTTCATCGCTTACAGGGAGTAGAACACCTGCAGT
TGTTCGTGTTCCCTACAAGCATGATGCTGCTCCGAGGAATTTTACGGCACTCGGCTTCGG
AGTTTGGACTGAGAAGTGTAGTGTAGGTTTAGCTTTTATGGGCAAGAAGAAACTATTCCA
GAGTGGATCTTGGCGTATCTTTGTGGTCACGTCGCACGAGCGAAAATAATGTCCAGTTAT
TCAATTTCTTTTTGCCATCTATGTGTGTATTCATGATTAATAATATACGAAA

Homology of Contig U35_8812 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01920.1	346	7e-123	protein\|expressed protein
Brachypodium v1_2	Bradi1g77950.1	354	7e-132
Arabidopsis v10	AT4G34090.3	390	2e-85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1). \| chr4:16328051-16330110 REVERSE LENGTH=390