barSeed - Barley Seed Development Database

Probe CUST_20002_PI390587928

Source Contig U35_8818

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20002_PI390587928	Hv_44K_v2	TTCGTATGATGTCAGTTTAACCTCGCATCAAGATGATGCAATGATGCCTGATATTGTCTT	985	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.455	0.602	0.877	1.711	1.234	1.475
Raw	105.604	228.117	282.653	853.077	219.186	284.484

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6266.1	1293	2e-24	199 - 258	100	60 / 60	minus	None
JLOC1	JLOC1_4077.4	1414	8e-25	1048 - 1107	100	60 / 60	plus
JLOC1	JLOC1_4077.3	1762	8e-25	1396 - 1455	100	60 / 60	plus
JLOC1	JLOC1_4077.2	1390	8e-25	1024 - 1083	100	60 / 60	plus
JLOC1	JLOC1_4077.1	1336	8e-25	970 - 1029	100	60 / 60	plus
Harvest21	ABC18797	1048	3e-25	986 - 1045	100	60 / 60	plus
Harvest35	U35_8818	1048	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1048 bp)

>U35_8818 1048 Hv_44K_v2
GCTCCGTTCTGCCCAAGGCGGCCACCGCCGACGCTGCGTCGCCGCCATCGCCGCTTCTCT
CCCCCAACCCTCCACCCACGTCGCCGCCATCCTTCCTCGCGGCGCCCCTGCCGTCTCCGC
CCGAACGCAATCTCCAGATTTCGAGGGCTCGGCGCTCCCATGGCGACACCCGAAGACCAT
GCCGAGAGCATGACGGGGGAGTACGCTGAGACGGAGTGTGCCGATTTCGAGGCGAGGGTC
AGGAGGACGATATACATCGACCACCTCTCCCCTGTGGTCACCCGCCAGGTGATCCGAGCA
GCTCTCTCCCAGTGTGCGAACGTCGTCAGTGTGGAGTTCATTGAGAACTACACAATCCCG
TACGACATCCCCGCCGCCGCGCTGGTGGAGTTGGACGACGAGTCGCAGGCCAAGTCTGCC
GTGGACTTGATGCGAGATTTCCCCTTCATAATCGGCGGAATGCCCAGGCCTGTCCGAGCC
AGCTACGCAAGGCCCGAAATGTTTCCGGACCGTCCGAGCCCGCCTGGCTCCAAGATGGAG
TTCCTTTGGCTGAAACAAGGAGATCCAGAGTATGATGGGATGAACAAGCTGAAGAGCCTC
GCAAAGAGGCAGGAAGCAGAGAACATGGCGCTTATCAAGAATATACTGGAGGAGGAGAAG
GGGCTGGCGGCTCAGCAGCAGATAATGCTTGATGCGAACTACTACAAGTACAACATGCTT
GAGAACATCGTGCAGAACGGGACCATCAAGAACCTTGCTGGCCATTATAGGGTCAACTTG
TTTGACGGCTGATCATTTTCGACAGTCTATGAAGTGGCTTCAGAGATTGCAGTCCCCAGT
GCAAGCTTGCTCCATTCCACTCGTAAAAATGTGTGATAGTGACAACAATCGACTAGTTTG
ATGCAGCTGCGCACTACTTGTGGCCAGCTGCATCTTCTGTGTAAAAGTGGGTACTTAGTG
TGTCAGCTTAGATTATGACGTAATCTTCGTATGATGTCAGTTTAACCTCGCATCAAGATG
ATGCAATGATGCCTGATATTGTCTTGTG

Homology of Contig U35_8818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g02400.4	215	7e-90	protein\|RNA-binding region RNP-1, putative, expressed
Brachypodium v1_2	Bradi5g27270.1	202	2e-102
Arabidopsis v10	None