barSeed - Barley Seed Development Database

Probe CUST_19995_PI390587928

Source Contig U35_8826

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19995_PI390587928	Hv_44K_v2	ACAGCTCCGGCAACACGGGCGGGCGCCGCGCCTTCGCCGAGTTCTCCAGCTCCATCATGC	536	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60750.1	4530	2e-24	794 - 853	100	60 / 60	plus	ABC46643
MLOC	MLOC_60749.2	1701	2e-24	558 - 617	100	60 / 60	plus	ABC46643
MLOC	MLOC_60749.1	2386	2e-24	680 - 739	100	60 / 60	plus	ABC46643
MLOC	MLOC_60749.3	2188	2e-24	516 - 575	100	60 / 60	plus	ABC46643
JLOC1	JLOC1_39641.1	4003	8e-25	3317 - 3376	100	60 / 60	minus
JLOC1	JLOC1_39640.2	3662	8e-25	639 - 698	100	60 / 60	plus
JLOC1	JLOC1_39640.1	2915	8e-25	727 - 786	100	60 / 60	plus
Harvest35	U35_8826	596	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_8826 596 Hv_44K_v2
TTTTTTTTTTTTTCTCCCACTCGCTCACTCTGTTTCCGCTCTCCTCCTCTTTCTCATCCT
CTCTGCCACTAACCACCTCCCTCTGCATCAAACCCATCTCCCTCCTTCCCTCCCCTGTTT
CTCGCTTTCCCCCCCGCGACCGAATCTCCTGCGGCGCCGTCCCCCTCCAACTCCAATGGT
GAACCCGCCGGAGCTCTACCACCGGATCCTCGACGTCCCCAGGGGCACCTCGTTGCAGGG
GCTCCGCGCCGCGTACAAGGGCCTCGCCAGGAAATGGCACCCCGACAAGCACCCGCCGGC
TTCCAAGCCCGAGGCCGAGGCGCGCTTCAAGGCCATCACCGAGGCCTACGAGGCGCTCCT
GGACCAGCAGGAGAACAGGGCGGTGTTCGGGGTGTGCAACGACGACCGGGCCAGCGAGAT
GTTCGGGACGTTCGGCTCCGGAGGCGGCGGCGGCGCGCGCATGGCGAGGACGCGCAGCGA
CGACTTCTCCATGAGGAGCGCGCCCGCCACGCCGGCCAGGGAGTTCACCAAGGTCTACAG
CTCCGGCAACACGGGCGGGCGCCGCGCCTTCGCCGAGTTCTCCAGCTCCATCATGC

Homology of Contig U35_8826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65480.1	328	6e-58	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi2g56620.1	327	1e-60
Arabidopsis v10	None