barSeed - Barley Seed Development Database

Probe CUST_19991_PI390587928

Source Contig U35_8831

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19991_PI390587928	Hv_44K_v2	AAATTGCCTGTCAATTGAGAATACATTCTAATTGTATTTCCTACTTTCATTGGCCACGCT	615	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.282	1.105	0.995	0.394	0.414
Raw	315.223	455.989	349.371	486.542	68.556	79.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37594.1	1549	2e-24	47 - 106	100	60 / 60	minus	None
MLOC	AK373281	1771	3e-21	1718 - 1771	100	54 / 54	plus	None
JLOC1	JLOC1_24347.1	1511	8e-25	83 - 142	100	60 / 60	minus
Harvest35	U35_8831	736	3e-25	616 - 675	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_8831 736 Hv_44K_v2
ATCCTCAGGATCTTTGTTCTTACGTGGTGCTTCTCGTCTAGCGCAAGATTTTTTCTTCTC
TAGACGGCCTGATTTAGAGACATTCTGTGATGTTTGTCCAGATGTGATTGTTTCTCTTCA
ACAACAGATAGTTGGGCCATTCAGCTTTCGTGTTGAATCTTCTGTTGCCATTGACCCAAG
AAATCAGGACCATTTTGTCCGAGTGGACGACTCGGTCTTTGCCATCGATTGGGCTCTGAA
AGTCCTGGGTTCAGCAAAGGCCACAGCTTGGTATTCCCCCAAGCATCAGGAAGCAATGGT
GGAGCTTCGTTTCTTTGAGGTCTGATGAAGCATATAAAGGTTCTATCTCACGTCGAAGGT
CACAAGCATAATCATGTGGTTTTACGGTCCGGTCATATAGTGTCACATGGCGATCCCATC
ATATGACTGGTCAATGCTGCATTTTATCAAGCCTATGCATACAACCCCATTGGATTTATC
TGGGTTATATAGTATTACTTCGACATGTTGGATCATCGGTCCTGCCATGCTGTTCATCGG
GTAAAATAGTTTCTGCTATAGAGTAATCCACAGAGGAAATGACTATTTCAGTTCTAGGAC
AGTTGTTATGTATTCAAATTGCCTGTCAATTGAGAATACATTCTAATTGTATTTCCTACT
TTCATTGGCCACGCTTGCTCTTTCTTCATCAATCCATTATTATATAGTTTGAGAGTTTCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_8831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14820.1	464	3e-63	protein\|expressed protein
Brachypodium v1_2	Bradi2g08832.1	462	2e-62
Arabidopsis v10	None