barSeed - Barley Seed Development Database

Probe CUST_1998_PI390587928

Source Contig U35_46753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1998_PI390587928	Hv_44K_v2	GCTCAAACCGAGTCACGCCGTGTAGCCAATTTAGATGAGTTTATTATTCATGTTACTTTG	21	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.277	4.317	1.283	0.822	0.415	0.606
Raw	851.907	2513.464	620.212	662.099	111.310	178.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36367.9	560	2e-24	463 - 522	100	60 / 60	plus	ABC47262
MLOC	MLOC_36368.2	641	2e-24	540 - 599	100	60 / 60	plus	ABC47262
JLOC1	JLOC1_23404.3	798	8e-25	696 - 755	100	60 / 60	plus
JLOC1	JLOC1_23404.2	1047	8e-25	900 - 959	100	60 / 60	plus
JLOC1	JLOC1_23404.1	1298	8e-25	1151 - 1210	100	60 / 60	plus
Harvest21	ABC47262	530	3e-25	22 - 81	100	60 / 60	minus	ABC47262
Harvest21	ABC23518	677	5e-23	622 - 677	100	56 / 56	plus
Harvest35	U35_46753	530	3e-25	22 - 81	100	60 / 60	minus
Harvest35	U35_27883	677	5e-23	622 - 677	100	56 / 56	plus

Contig Sequence (530 bp)

>U35_46753 530 Hv_44K_v2
TTTTTTTTTTTTTTTTTATAACAAAGTAACATGAATAATAAACTCATCTAAATTGGCTAC
ACGGCGTGACTCGGTTTGAGCTGTACCACCCCTCAGCTCTATGAAATATAGAAACAATTA
GCAGATGAGCTAAATTAGTCGTTTTGTTTAGCTACAAATTCTAAAAACTTATGAAACCAG
TGCCATTCTTTTCTTTTTGGATGGCACTCCCGTGCGGTGCCCCTCCTTGTCTAGCTAAGC
CTGCTACCTCTATGTACACTTTGTTATTCGGTTAGCGAAGCCGCGGTGGTCTGGAGCTCT
CAACAGTGGACTGACCCATCGGCACCGTCCTGTGCGGGAAGGTTGAGATCTGGTAGCGCG
AAGCTGTCATGTGGGGACTGCTGCTGCTGCTGATCAAGCTGCTGTTTTCCCTTGTGCTCC
TTCAATGTGGCTTCATTCCGTGAGTTGGATTGCTCTATTCTTGTCTGCACAATGCCAAGA
TTTTTTTTCCGTTAGATGTGCCTATTATCACCACAGCACAGACATAATTA

Homology of Contig U35_46753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None