- Probe CUST_19986_PI390587928
- Source Contig U35_8836
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19986_PI390587928 | Hv_44K_v2 | TACCTCCATCTATCCGAGAACACGAAACCTTCCTTTGTGATTTATTACAGTACCTTTTTT | 849 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.207 | 1.427 | 1.097 | 1.036 | 0.396 | 0.479 |
| Raw | 457.302 | 844.820 | 567.528 | 848.100 | 113.071 | 147.847 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_55378.1 | 6929 | 2e-24 | 5244 - 5303 | 100 | 60 / 60 | minus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.17 | 4556 | 2e-24 | 1706 - 1765 | 100 | 60 / 60 | minus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.18 | 4545 | 2e-24 | 1695 - 1754 | 100 | 60 / 60 | minus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.14 | 4592 | 2e-24 | 1976 - 2035 | 100 | 60 / 60 | minus | ABC00911 ABC17473 |
| MLOC | MLOC_55378.15 | 4541 | 2e-24 | 1858 - 1917 | 100 | 60 / 60 | minus | ABC00911 ABC17473 |
| JLOC1 | JLOC1_35714.6 | 1989 | 8e-25 | 1835 - 1894 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35714.5 | 1993 | 8e-25 | 1839 - 1898 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35714.4 | 1926 | 8e-25 | 1772 - 1831 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35714.3 | 1610 | 8e-25 | 1456 - 1515 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35714.2 | 1673 | 8e-25 | 1519 - 1578 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_35714.1 | 1677 | 8e-25 | 1523 - 1582 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17473 | 948 | 3e-25 | 850 - 909 | 100 | 60 / 60 | plus | ABC17473 |
| Harvest35 | U35_8836 | 948 | 3e-25 | 850 - 909 | 100 | 60 / 60 | plus |
Contig Sequence (948 bp)
>U35_8836 948 Hv_44K_v2 GATGACAATGCACAGTTCTTGTGGATCTATGTCTAATCATGTTAGCGGATGTGTTTTGCT TATTATTTGACATATGTGTACTTGCAGGTTGAATCAGCCGATGCTTCTCAAATCATTGAG TCACTCCATGCTGGCTTTGTCCCTGTTTTGCATGGAGATGCTGTTCTTGATGAATTGCTG GACTGCACCATATTGAGTGGGGACGTCATCATACGCCACCTTGCACAGCTTCTGAGTCCA AAATATGTCGTTTTTCTGATGTTCATGGAGTATATGACCGTCCTCCAACTGACCCAAATG CAGTACTTCTCAAAGAGATAGAGGTAGATGACAACGGAGGCTGGTCGATTGTAAAACCTG CATTACAAGGCAACAGAAACGGAGTGGAGATATCAGTAGCCGCACACGACACCACCGGAG GAATGGAGACCAAAATACTGGAAGCTGCCGCGATAGCTAGGCTTGGAGTTGATGTGTACA TTACAAAGGTTGATACAGAGCACTCCCTGAGAGCCTTGAAGGGGGATGTGAACGCAAGCT CAGACGATTGGCTTGGAACTGTCATACGCTCTGCCAAATAGAGTTCTTGCCACAGAACAG AAGCAACACATCTTTCTAATGTCCTGTAGGGTTTGCCGATGGGCTTTGATGTTCGCCAGA TGATAGTTTAGAGGTTTATCCCTACTTGTTTTTTTCGAGAAAACGCAAAGGACCCTTTGT GTTTCGTTTCATTGAAAAGATGGAAAGTAGAATCCTCCTAAGAGGCTGGTTATACATGGG TCGTGAGGTTTATCCCTGCTGCTATCATTTTTTGGCTGAATGTCACGCTAGTGTTGCGAG CAGTGTTAATACCTCCATCTATCCGAGAACACGAAACCTTCCTTTGTGATTTATTACAGT ACCTTTTTTTATGAGAAAATACAGTTGTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_8836 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g55890.1 | 336 | 2e-71 | protein|amino acid kinase, putative, expressed |
| Brachypodium v1_2 | Bradi2g50820.1 | 336 | 3e-76 | |
| Arabidopsis v10 | None |