barSeed - Barley Seed Development Database

Probe CUST_19985_PI390587928

Source Contig U35_8837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19985_PI390587928	Hv_44K_v2	CTCATGGCGGATTCCCATATGGGAGAAGTCTAAGATTTGCTTCTATGTGATGGATCATCC	979	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371649	3911	2e-24	2470 - 2529	100	60 / 60	plus	ABC08731
MLOC	MLOC_24797.2	1924	2e-24	1829 - 1888	100	60 / 60	plus	None
MLOC	MLOC_24797.1	3874	2e-24	2606 - 2665	100	60 / 60	plus	None
JLOC1	JLOC1_17028.2	2897	8e-25	1625 - 1684	100	60 / 60	plus
JLOC1	JLOC1_17028.1	3862	8e-25	2590 - 2649	100	60 / 60	plus
Harvest21	ABC17368	1037	4e-24	980 - 1037	100	58 / 58	plus
Harvest35	U35_8837	1039	3e-25	980 - 1039	100	60 / 60	plus

Contig Sequence (1039 bp)

>U35_8837 1039 Hv_44K_v2
GTCCTATATCTGCTCTTTGTTTCGATCCTAGTGGGACCCTTTTGGTCACAGCCTCTGTTC
ATGGCCACAACATAAATGTTTTCAGGATCATGCCGACCTGCATTGCTAATGGCTCGGGCT
CAAAACGCTATGATTGGGCATCATCTCATGTTCACCTTTACAAACTGTATCGTGGCATGA
CAGCAGCGGTCATACAGGACATATCTTTTAGTCATTTTAGCCAGTGGGTATCTATTGTTT
CAGCGCGAGGCACTTGCCATATTTTTACTTTGTCTCCGTTTGGAGGGGATTCAAGCTTGC
AGCCACAGAATTCTCACAGTGATGGGCCTCCTCTTGCCCCGTGTCAGTCAAGGCCATGGT
GGTCAAAGCCATCCTTTCTTATGGATCAACAGCTTCATCCTGTGCCATCAACTGTGACAA
ATTCTGTGGTCAGTAGGATAAAAAACAATGGTTCTAGTTGGCTAAATGCGGTCAGCAACG
TGGCTGCTTCTGCAAGTGGAAAACTATCCGTGCCATCTGGTGCTATCACTGCTATTTTTT
ACAATTCCATTTACAAAGGTTCTCTGCCGGCTCCGTCGAAGGCTAATGCTTTGGAGCATT
TATTGGTGTATTCACCATCTGGTCATGTTATTCAACATGAACTTCTGCCTTCTTCGGGTT
CTGAATCCTCTGATAACAGCCCAACAGTTGGGTCTGGTAGCCATTTGCAGCTCCAAGATG
ATGAGTTGCATGTTACCGCTGAGCCAGTTCAGTGGTGGGATGTTTGCCGGAGGACAAACT
GGCCTGAAAGAGACCAGGACATTGCAAATGTTGTATTCCACAACCAACTAAACAGTATGA
TGACACCAGACACTTCTGACTGTGAGGATAGTGACCATTCTGATTTCACTCCATCAAATG
ATGGTGTATCCAGAAAAGAGGTTATGAAAGTTAAAGAAAGATCTAGCTGGTATCTCTCAA
ATGCAGAGGTTCATATAAACTCATGGCGGATTCCCATATGGGAGAAGTCTAAGATTTGCT
TCTATGTGATGGATCATCC

Homology of Contig U35_8837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33610.3	769	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g25677.1	1016	0.0
Arabidopsis v10	AT1G54710.1	927	5e-97	\| Symbols: ATATG18H, ATG18H \| homolog of yeast autophagy 18 (ATG18) H \| chr1:20417019-20420733 REVERSE LENGTH=927