barSeed - Barley Seed Development Database

Probe CUST_19982_PI390587928

Source Contig U35_8840

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19982_PI390587928	Hv_44K_v2	ATGATGATGTTCATGACTTGTGCCTTTTGCACCAAATCCTTGCAAATTGATCCCAAAAAA	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75202.2	1492	6e-24	30 - 88	100	59 / 59	minus	ABC02822 ABC17757 ABC44733
MLOC	MLOC_75202.1	2186	6e-24	399 - 457	100	59 / 59	minus	ABC02822 ABC17757 ABC42355 ABC44733
Harvest21	ABC17757	644	3e-25	544 - 603	100	60 / 60	plus	ABC17757
Harvest35	U35_8840	644	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_8840 644 Hv_44K_v2
GCCGCGTTTCAAACGAGGCCGATCTCCGATGAGCTCTCCGGCGAGGTCGACCGTCTCGGC
GGCGAGCGCGGGAGGCGGGATCGCGCTCTCCGCTGCCGACGACCTCGCCGACTCGATTGA
CGCGCTCTACCGCAAGGACGAGGCCATGACCGAGCTCAAGTCGGAGGTCATGGAGGCGCT
GCAAAAGGAGGTCAGGTCGCTCGACGACAACAGCTGGATGTTCGCCGCCCCGCGCTCCCG
CATCAACCTCGTTTCCAAGCGAGGTGGTTACCTGCCCCAGCAACAGGGGAAAATTGCGGA
GTTGGATCAAGCGGCCAAGAAGACAAGGAACTGCTAGGGATTATAGGATTTTCCATCCAG
GCTGTGCTCCTAGGGGCTGTCATCTGATTCCAGACACCTGGAGTTGCATTCATCTAAATC
ATTTCCAAGTACATGCTAGGATATTTAGGTGACCCAAGTGTGCTGCTGTTGCTCATAAGT
CATAACTTATTTAAATCAGTTTCAGGTACATGCTATGCTTTACATTTAAGTAATCCAATT
GTTATGATGATGTTCATGACTTGTGCCTTTTGCACCAAATCCTTGCAAATTGATCCCAAA
AAAATTTCTCAGATAAATCTTGAGATACAGTGTGTTGACTTCGT

Homology of Contig U35_8840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None