barSeed - Barley Seed Development Database

Probe CUST_19980_PI390587928

Source Contig U35_8844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19980_PI390587928	Hv_44K_v2	ACATATTGCGAGTCAATGGAAGTGATATCCGTCCTTGGTGGGTATGCCATCACTATTGTG	705	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.243	0.331	0.815	1.962	1.284	1.809
Raw	47.900	93.790	222.693	849.285	193.503	296.022

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5115.3	2096	2e-24	1283 - 1342	100	60 / 60	minus	None
MLOC	MLOC_5115.5	1586	2e-24	476 - 535	100	60 / 60	minus	None
MLOC	MLOC_5115.1	2415	2e-24	1305 - 1364	100	60 / 60	minus	None
MLOC	MLOC_5115.2	2937	2e-24	1412 - 1471	100	60 / 60	minus	None
MLOC	MLOC_5115.4	1780	2e-24	873 - 932	100	60 / 60	minus	None
JLOC1	JLOC1_3263.1	1984	8e-25	791 - 850	100	60 / 60	plus
Harvest21	ABC17892	829	3e-25	706 - 765	100	60 / 60	plus
Harvest35	U35_8844	829	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (829 bp)

>U35_8844 829 Hv_44K_v2
ATTGATCTAAGCGGATCGCAAATCAAACCAACCCACACCTCTCCCTGCCTGCCATTTCCT
CTCTCCCTCTTCCTCCCCTCGCCGCGGGCCCCACCCGTCAGCCTGCCGCGTAGTAGAGAC
TAGACTAGAGAGAGGGCGACAAGGGAGCAGCTAGAGAGAGAGAGACAAGGAAAGGGCACC
GGAGGAGATGGGAGAGGCAGGGGAGCAGACGGCGGAGGCAGCGGCGTTGCGAGCGGCGGA
GCAGGCGCGGGAGCTGCAGGACGCCGCTGCGGCGTTGCTTTCGAGGACGTGGGCGGAGGA
GGAGGCGCTGCGCCGCCGCGCCGCCGCGCTCAGGGAGGACCTCGCCCGCCTGCGCAAGGC
CGCCGCCTGCGCACAAACCGAAAAGGTCCACGAGGACTTGGATCGAGCGTCATGCCTCAT
AAGTGACGGTGACATTGCGACGATTCTCCCTAGCAAGGCGCATGGCACTTTTTTGAAGCT
ACTCTTGGGACCTGTGAATCTCCGCGCAAGGAAGGAGGTACAGCTCAAGGTGAAGGAGGA
ATACAATAGCTACAGGGATAGGACTGCCATAGTGTTTCTTGGTTTTCCAATGATTCTGTT
GTTTCTTCGGTCATGGCTATGGAATGGATGCTTTCCAGCGTTGCCAGTTCAGCTATATCA
GGCGTTGGCTGTTATTCCTCTATACAACTTTAGCTTTGCGAGAGAACATATTGCGAGTCA
ATGGAAGTGATATCCGTCCTTGGTGGGTATGCCATCACTATTGTGCCATGCTGATGGCTC
TTGTGAGCCTCACATGGGAGATTAAGGGACAACCTGATTGTGCACGGAA

Homology of Contig U35_8844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g05660.1	341	3e-53	protein\|expressed protein
Brachypodium v1_2	Bradi3g17040.2	216	5e-56
Arabidopsis v10	None