barSeed - Barley Seed Development Database

Probe CUST_19979_PI390587928

Source Contig U35_8845

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19979_PI390587928	Hv_44K_v2	GGTCTCGAGCTGTATCAAAGGTTTCTTAGTTGAGGAGATCTCCGAGAAAGTACCAAAAAA	1067	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.981	1.463	1.147	0.848	0.345	0.421
Raw	359.490	802.648	567.619	669.098	94.317	124.500

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66376.1	1398	3e-21	60 - 113	100	54 / 54	minus	ABC19193
MLOC	MLOC_66376.2	2642	3e-21	41 - 94	100	54 / 54	minus	ABC19193
JLOC1	JLOC1_43730.1	2562	2e-21	2292 - 2345	100	54 / 54	plus
Harvest21	ABC19193	813	3e-25	743 - 802	100	60 / 60	plus	ABC19193
Harvest35	U35_8845	1138	3e-25	1068 - 1127	100	60 / 60	plus

Contig Sequence (1138 bp)

>U35_8845 1138 Hv_44K_v2
GGCGAATTGGGCCCTTTCGAAAATGCTCGAGCGGCCGCTGAGTAGCTCTCCATCTTTCAA
TTCGAGACCCTCTCTTTCTACCGGCAGCAGCTTGGTCCTCAAGCATGCAAAAGGAACTTC
ACGGTCTTTTGATGGTGGTACAAGGTCTCTAGACCGGGGAAAGGTCCTTGTGAATGGACC
TCATTTACTCAATAGATCTACAGATGCTGTTGGGGATTGCGAGACTACTGATAGCTGGAA
GGCTAGTGGAGAAGAGAAAAGTACTGAAACCACAAATAGTGATTCAACCGATATGGTCTC
TGGTGTACTCTATGACATGCTGCAGAAGGAGGTGGTCTCATTGAGAAAGGCATGCCATGA
AAAAGACCAAAGTCTAAAGGACAAGGATGATGCAATTGAGATGTTAGCAAAGAAAGTAGA
CACTTTAACCAAAGCCATGGAAGTGGAGGCTAAAAAGATGAGGCGAGAGGTAGCTGCTAT
GGAGAAAGAGGTTTCTGCTATGCGCCTCGAGAAGGAACAAGAGAACAAGGCCAAGCGTCT
TGGGAGTTTGAGAGGACCTGGCACAGTTTCTCAGGCACTTCCCGGAAGAAGTGCACCACG
TGGCGGGTTGGCGCGCAACGTCCAATAACGCATCGCACCTCTAACACCAGGCAACATGAA
ATTCTTTGATAGGTTCTGTTTCCCTTTGTGTCCCCCCTTATTAATTTTGTGGTTGAGATA
GCACAGATGACCCTCTGATACCTAGATTTGGGGGAAAAGAGTAGGAGGCTTGCATCATCT
GACACCGGCTCGCTGTAATGTAGTGGTGAAGGTGTAGTAAACCCTTGTAAGGCTTACTTG
ACCTTGCGGCACGCTCTCATTTTGTCAAGGCGGTGCGCGTTGTGGTTGTATAGGCTGGAA
GAAGACCGACCCCGCGTCTTCGTGGATATTCTCCCCATCTGTAATTTTTTAGCTAGTGTG
GTTTTTTGATTGTTCGGGTTGTGGTTTGTGAATATCATTTGTACCCTGCTGTGGCCACCC
ATGTACCAGTCGTTCGTTTGTTGTTGCTGGGCTGGAGTCGTGGTTTTGGTCTCGAGCTGT
ATCAAAGGTTTCTTAGTTGAGGAGATCTCCGAGAAAGTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50320.1	600	3e-97	protein\|ATMAP70 protein, putative, expressed
Brachypodium v1_2	Bradi3g59920.1	600	9e-106
Arabidopsis v10	AT1G24764.1	634	4e-64	\| Symbols: ATMAP70-2, MAP70-2 \| microtubule-associated proteins 70-2 \| chr1:8760001-8763256 REVERSE LENGTH=634