barSeed - Barley Seed Development Database

Probe CUST_19978_PI390587928

Source Contig U35_8846

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19978_PI390587928	Hv_44K_v2	TGGTGCCTGGGATGACAAGAATCCTACAGTACAAACTTGCAATGCTAACACTAAGATAAC	664	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.233	1.055	1.568	1.014	0.487	0.216
Raw	61.881	77.409	108.552	108.085	18.466	9.052

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18736.1	2236	2e-24	577 - 636	100	60 / 60	plus	ABC04671
JLOC1	JLOC1_12977.1	2253	8e-25	577 - 636	100	60 / 60	plus
Harvest21	ABC16927	726	3e-25	665 - 724	100	60 / 60	plus
Harvest35	U35_8846	727	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (727 bp)

>U35_8846 727 Hv_44K_v2
ACACTACTCCCCCACTTCTCCCCCGCCTCGCCTCCCCCGACATGGCGATCACCGGCGGCC
CGCGCGGCCGCCTCCTCCTCCTCCTCTTCCTCGCCGCCGCCTGCCTCGTCTGCGCCCCCG
CCCGCGCCTTCTACCTCCCCGGCGTCGCCCCACGCGACTTCCAGAAGGATGATGATCTCC
AGGTGAAGGTCAACAAGCTGTCATCTATAAAGACACAACTTCCATATGACTATTATTTCC
TGGACTACTGCAAACCTGAGGCGATTAAGAACAGTGCTGAGAACTTAGGGGAAGTCCTTC
GTGGGGACCGCATTGAAAATTCTGTCTATAATTTCAAGATGAGGAGGGACGAGAGCTGCA
AAGTTGTTTGTCGAACAAAACTTTCTGCAGAAGCTGCAAAGAATTTCAGAGAGAAGATCG
ATGATGAATATCGAGTCAACATGATTTTGGATAATCTCCCAGTTGTGGTCCCTAGACAGG
CACGGGAAGGAAGCCCAACACCGAACTTTGACCATGGTTACCGCGTTGGCTATAAGCTCA
AGGATGACAAGTACTATATTAATAATCACTTGAGCTTTAAAGTCTTGTACCATGAAGACC
TGAACTCCCCAGAGGCTCGTATTGTTGGCTTCCATGTGATTCCTAGCAGCATTAAGCATG
AATATGGTGCCTGGGATGACAAGAATCCTACAGTACAAACTTGCAATGCTAACACTAAGA
TAACTCC

Homology of Contig U35_8846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37160.1	643	2e-130	protein\|transmembrane 9 superfamily member, putative, expressed
Brachypodium v1_2	Bradi1g37590.1	638	6e-134
Arabidopsis v10	AT3G13772.1	641	4e-92	\| Symbols: TMN7, AtTMN7 \| transmembrane nine 7 \| chr3:4521712-4524394 REVERSE LENGTH=641