barSeed - Barley Seed Development Database

Probe CUST_19975_PI390587928

Source Contig U35_8849

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19975_PI390587928	Hv_44K_v2	TACATGTCTACAGGATTCCAAGGATTACACAGCCCCTGAATCTCATTTGAACACCCTGAA	763	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.376	0.524	1.454	2.244	1.149	1.051
Raw	45.411	103.253	242.744	591.442	105.396	105.278

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53077.2	1849	2e-24	1255 - 1314	100	60 / 60	plus	ABC42743
MLOC	MLOC_53077.1	2210	2e-24	1451 - 1510	100	60 / 60	plus	ABC42743
MLOC	AK355914	1984	7e-23	1404 - 1463	98	59 / 60	plus	ABC42743
JLOC1	JLOC1_34063.1	2415	8e-25	1586 - 1645	100	60 / 60	plus
Harvest21	ABC18477	877	3e-25	764 - 823	100	60 / 60	plus
Harvest35	U35_8849	877	3e-25	764 - 823	100	60 / 60	plus

Contig Sequence (877 bp)

>U35_8849 877 Hv_44K_v2
GGAGGTTGACAAAATCGCAACAGAGTTGAAAAACGTTGTTGCGTGCACTAGTTACATCCT
TGAACAGAAGCTGGTCGAAGCATGGTCTGCTGATAAGGCTGCTGAAGCGTTAAGATGCCA
GAAATTGCTTGTGGAGGAAGAGGACGCTGCTCAAAAAAGGCAAGCCGAACTCATGGAAAG
GAAAAGGATGAATAAACTGAGACAGAAAGAACAGAGGTTGAAGGACCTCAAGGACGAGTA
TACCACGGTTCCAGTTACCTGAAGTGGTGGATGGAGGGACAAGCTCTCCTGGGATTCAGA
GTCTCGAGGCTGTTTCAGGCCCTGGTCTCCATGAGCAAGAGGATCCACAGCATCTTCGCT
GGCCAGCACCAGTGCCTTCAGAGGATAATGGGTGTGATGGAGAAGGTGCCAGTTGTGGTT
CGGGACAAGTAATGGACACTGGGGCTGTTTTCAGGGAACAAGCCATGGCAGCAATCAATC
TCGAGAGGGTAGAAAACCTTCCTCAGAATAGCACTGTCTCAGCTTCTTCCACGACTGCGT
CGAAGCATCCATCTTCAGTAAGGCACTCACGCCATAGGGAACTGAATGTTGGTGCAGTTT
CAAACAAAAGCAAGACCTGGGCATGGAAAGTGCGAACCGATACGGAAGAACGGTGCCCAA
AAGTCGAGCCAGATGCACATGCTAATCAAGAGACGGCTCCGAACACGGACAAAAACTCGC
AAGTGCTAATAGGGTCAATAAGCGTTGCGATTGAAGACGACAGTACATGTCTACAGGATT
CCAAGGATTACACAGCCCCTGAATCTCATTTGAACACCCTGAACCATCCAGTGGCCGAGG
CGATGCAGCCAGTTAGCCATGATGAGAACGGATGCGA

Homology of Contig U35_8849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39660.1	544	5e-77	protein\|ZOS9-21 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi4g38720.1	559	9e-98
Arabidopsis v10	None