barSeed - Barley Seed Development Database

Probe CUST_19974_PI390587928

Source Contig U35_8850

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19974_PI390587928	Hv_44K_v2	GTCTGTATTGCTTGCCTTGATCTGAAAGTATGTACTGAAGTTTGTTGTTTGCTGTCCAAA	871	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.517	0.432	0.382	1.902	2.665	4.665
Raw	3.085	3.019	3.882	42.305	19.568	37.912

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62184.5	3979	7e-23	3066 - 3122	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.12	3174	7e-23	2213 - 2269	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.9	3468	7e-23	2735 - 2791	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.10	3778	7e-23	3045 - 3101	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.14	3701	7e-23	2975 - 3031	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.13	3198	7e-23	2679 - 2735	100	57 / 57	plus	ABC17028
MLOC	MLOC_62184.16	3293	7e-23	2343 - 2399	100	57 / 57	plus	ABC17028
JLOC1	JLOC1_40673.14	3742	4e-23	681 - 737	100	57 / 57	minus
Harvest21	ABC17028	945	3e-25	15 - 74	100	60 / 60	minus	ABC17028
Harvest35	U35_8850	945	3e-25	872 - 931	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_8850 945 Hv_44K_v2
GGTTGAAGCAGCTTCAGATTTCTTCAAACTGCCAAGTGAGACAAAGGAAGAGTTTGCATC
AGACGACCTCCGACGGCCTGTTAGATATGACACCAGCTCGAAGGACGGCATTAGTATGTC
ACGGTCATACCTAAAGCATTATGCCCATCCCCTGAGTGAATGGAAGCAATATTGGCCGGA
AAACCCCCCAATCTACAGGGAATATATGGGAATGTTTGCTGTTGAATTAAGGAGGGTGGC
TTTGCAGCTAATGGAAGCCATACTCGAAGGCCTAGGATTGGGTAAGGATTACCAGCGTGA
AAAGTTTGAGGAAGGATTGCAGTTAATGTCAGTGAATTGCTACCCCAAAGAATCAGAAGG
TGATTCGGCGATAGGGCTGGCGCCGCATTCCGATTATGGACTCCTCACCATCTTGCTCAC
AAGTTGTCGAGGCCTGGAGGTTGTTGACCGCAACAGCAACAGCTGGAAAGTGGTCCAGCA
GCTTCCACATGCGTTGCATGTCCATGTAGGAGACCACATGGAAGTCCTGAGCAACGGCCA
AATCAAGACCGTTGTGCACCGTGCTGTTCTGAATCCTGAAGAAGCAAGGATCTCCATTGC
TAGCATTCATGGTTTTGCAATGCATGAGAAGGTCTGCAGTGCCAAAGAGCTGGTCAATGA
GAAAAATCCCGAGAAGTACAATGGGAGCAGCTTCAACGACTTCCTAGATCATCTCACAAG
CAATATGGACAACAAGGATAGGAACTTTCTCGAGAGCCTCAAGATGTGAGGAGCGTGAAA
GCGGGTAAAATGATGAGCTCCATGCCTACAACAGTTCTTCATCCTCATGCGTTCCAGGCT
ACTTATCTGCAATAATGGTGCTATGTAAGGAGTCTGTATTGCTTGCCTTGATCTGAAAGT
ATGTACTGAAGTTTGTTGTTTGCTGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8850 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57160.2	327	4e-153	protein\|flavonol synthase/flavanone 3-hydroxylase, putative, expressed
Brachypodium v1_2	Bradi5g25407.1	325	2e-159
Arabidopsis v10	AT5G07480.1	340	2e-83	\| Symbols: KUOX1 \| KAR-UP oxidoreductase 1 \| chr5:2367167-2369554 FORWARD LENGTH=340