barSeed - Barley Seed Development Database

Probe CUST_19969_PI390587928

Source Contig U35_8855

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19969_PI390587928	Hv_44K_v2	CCAAACTGTTCCTTGAAATCGACTTACTCATGAAGCCCTTTTATTTCATTCCTTATGTTC	1320	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.354	0.721	1.334	1.784	1.031	1.125
Raw	190.897	618.600	988.809	2024.327	419.989	497.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76220.1	1295	2e-24	1161 - 1220	100	60 / 60	plus	ABC18293
JLOC1	JLOC1_50825.1	1579	8e-25	959 - 1018	100	60 / 60	plus
Harvest21	ABC18293	1400	3e-25	1321 - 1380	100	60 / 60	plus	ABC18293
Harvest35	U35_8855	1400	3e-25	1321 - 1380	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_8855 1400 Hv_44K_v2
GGGAAGATCCCCAGGTCGCCCTACAAGGTGCTGGACGCGCCCGCATTGCAGGACGACTTC
TACCTCAACCTCGTGGATTGGTCCTCGCACAATGTCCTCTCCGTCGGATTGGGGAATTGC
GTCTACCTGTGGAATGCATGCAGCAGCAAGGTCACCAAGCTCTGCGATTTGGGGGCGGAC
GACACCGTTTGTTCCGTCAGTTGGGCGCAGCGTGGCACACACCTGGCTGTAGGGACTAAC
CAAGGCACCGTTCAGATATGGGATGCAACACGGTGTAAAAGAATGAGAACCATGGAAAGC
CATCGCATGCGAGTAGGTGCTCTTGCGTGGAACTCTTCATTGCTTTCTTCTGGTAGTCGC
GACAAGAACATCCTTCACCATGATCTCCGTGCTCCGGAGGACTATGTTAGCAAGCTCACT
GGGCATAAATCTGAGGTCTGTGGGCTCAAGTGGTCTTATGATAACCGTCAGCTTGCGTCT
GGTGGAAATGACAACAAACTTTTTGTTTGGAATCAACATTCGGTACAGCCAGTGCTGAAG
TATACTGAGCACACAGCAGCTGTGAAAGCTATTGCCTGGTCACCTCATCTACATGGCCTT
CTTGCATCTGGCGGAGGAACTGCAGATAGATGCATACGCTTTTGGAATACAACCACAAAT
ACACACTTGAGTTCCATGGATACAGGGAGTCAGGTGTGTAATCTTGTTTGGTCAAAGAAT
GTGAATGAGCTTGTTAGCACCCATGGATACTCCCAGAATCAGATAATAGTTTGGCGGTAT
CCAACGATGTCAAAGCTTGCCACTTTAACAGGACATACATTCAGAGTATTATATTTAGCC
ATCTCCCCTGATGGACAGACAATTGTTACTGGTGCTGGTGACGAGACCCTCCGGTTTTGG
AACGTGTTTCCGTCTCCCAAGTCCCAGAGTTCTGACAGCTTAAGTAGCATTGGAGCGACA
TCATTTGTTAGGAGCTACATCCGGTGACTCGACGAAATGTAGTTTCGTCGAGCTTGTAAG
GTTATTGCGGCGAGTGCTGATGATCATCAGCACCACTCCATTCCACTTGTACCACACGAC
CTCGTCCGGTCCATCTGCTGCTGAAGCCAGCACCATTTTAGAGATTGCAAGGTAGAGGAT
GATTGACTGGCTTGCGCGGACCCGGTCCCCTATGTCGGGGCTGAAAGCGGTACATATTTG
TTGCTGTAGGTGCGAAGGTGGCAAATGTTCATGTCACAGAAACATGGAACTGCCGCGTCC
AGCAGAAGATTATTTACTCCCCTCCTGTTTATGTTCCCATTGGAACTGATGACCTGGGAA
CCAAACTGTTCCTTGAAATCGACTTACTCATGAAGCCCTTTTATTTCATTCCTTATGTTC
TTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g03150.1	524	protein\|WD repeat-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g76990.1	518
Arabidopsis v10	AT4G22910.1	483	\| Symbols: FZR2, CCS52A1 \| FIZZY-related 2 \| chr4:12012743-12015663 FORWARD LENGTH=483