barSeed - Barley Seed Development Database

Probe CUST_19967_PI390587928

Source Contig U35_8857

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19967_PI390587928	Hv_44K_v2	TGCATAATGAATATCTTGAAACTGGAAGGATCAGGAGGGCTCTTTAGGCATAATGGTGGT	1131	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.130	1.018	1.533	1.226	0.543	0.485
Raw	80.878	106.442	152.074	192.447	29.538	28.918

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356133	1911	2e-24	1091 - 1150	100	60 / 60	plus	None
MLOC	MLOC_74303.2	3682	2e-24	887 - 946	100	60 / 60	minus	None
MLOC	MLOC_74303.1	3524	2e-24	956 - 1015	100	60 / 60	minus	None
JLOC1	JLOC1_49513.1	2377	8e-25	160 - 219	100	60 / 60	minus
JLOC1	JLOC1_49514.1	3490	8e-25	2474 - 2533	100	60 / 60	plus
Harvest21	ABC17322	1190	1e-24	1132 - 1190	100	59 / 59	plus
Harvest35	U35_8857	1191	3e-25	1132 - 1191	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_8857 1191 Hv_44K_v2
CAGTTAGCAGCACTTCTTGACGAGTTCTGGGGGCATCTTTTTGATTATCATGGTAAGCTT
ACACAAGATGCTAATGAAAAAAGGTATAACTTTTTGCTTGGATTGGACTTGGGAGCAGCT
AATTCTGCTGTGAGGGCTGATAACAAAACCATTGAAGCTTCAAAGAGCCCCTTGATGAGA
GACGCGCTGCGAGCATCAGCTACCTCACTGAACTCGTGGGACTCGATGTCCCGTGATAAG
GATATCCGTAGTCTAGACTGGAGTTCTGGGCATCAGATGGGTCCAATGGGTTCATCCAAC
TGGTCCCAGAGCATGAATTCACCATATACAGACATTTCGAGTTCAAGCAGCAGCTTACTT
GAGCAAAATGCAAAATACTATTCAAATTTCAACATGCCATCTTACTCTGATAATCAGTTC
TATCAGCCTGCTACTATTCATGGATATCAGCTGGCATCTATTTTGAAAGGGATGAATGCA
AGTAGAAATCAGCACTCTAACATCCCCCTGGACCCAAGACGGGTTCCTAGGTCGTCGGAA
TATTCTTTTTCTAACTATGCTGATCCTGTTATGCATGCCCGCAACCAAAATTTACGGGGT
TCACTGGGACCTAACTCTCCACAAAGCCCAGCAATGAATCGCTTCAATGCAACGGTCGAG
AGACCTTATTATGATTCTACCTCTGTTGATGAAAGTGAAAGTGTTGGCTCACCTGGATAC
TCAAAGAAGTATCACAGTTCACCTGACATATCTGCACTAATTGCTGCAAACAGAAGGGCT
TTGTTGAACGAACCAAATTTAGGTGGCGCTGCCGGAAATCAATCATACCTAAGTAAGCTG
GCATCTGAGAGATCGCAATATGTGGACTCGGCAGCCAGGTCCAAAGCTCAAATTGCATTT
AATGAGCGGTCACAGCATAATCTCCAAAGAGATGTCCTTTCTATGCAGTTGGGTATGAAC
CCCAACAATAAATCCCTTTGGGCCCAACAACCGTTTGAACAGCTGTTTGGTATGTCAAGT
GCAGAACTGAATAAGAGTGAGGTGAACACTGGCCAGAGATCAAGTGGCATGACAAAGGAT
GATTACTCTTACACTGGGTGTGAGGCAGAGCTTCTTCAATCACTTAGGCTTTGCATAATG
AATATCTTGAAACTGGAAGGATCAGGAGGGCTCTTTAGGCATAATGGTGGT

Homology of Contig U35_8857 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g49400.1	1300	9e-143	protein\|ethylene-insensitive protein, putative, expressed
Brachypodium v1_2	Bradi4g08380.1	1265	0.0
Arabidopsis v10	None