barSeed - Barley Seed Development Database

Probe CUST_19965_PI390587928

Source Contig U35_8860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19965_PI390587928	Hv_44K_v2	AATGCACCACCAGGTCTAGACTACGAGAGGGACAAGCGATTTTCGAAGTATTTTAAGGAC	1304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59092.4	2920	2e-24	1296 - 1355	100	60 / 60	plus	ABC12931
MLOC	MLOC_59092.2	2955	2e-24	1585 - 1644	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.3	2971	2e-24	1582 - 1641	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.6	3084	2e-24	1599 - 1658	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.7	3109	2e-24	1640 - 1699	100	60 / 60	minus	ABC12931
MLOC	MLOC_59092.9	2969	2e-24	1582 - 1641	100	60 / 60	minus	ABC12931
JLOC1	JLOC1_38430.7	3236	8e-25	1411 - 1470	100	60 / 60	plus
JLOC1	JLOC1_38430.6	3228	8e-25	1331 - 1390	100	60 / 60	plus
JLOC1	JLOC1_38430.5	3150	8e-25	1329 - 1388	100	60 / 60	plus
JLOC1	JLOC1_38430.4	3157	8e-25	1329 - 1388	100	60 / 60	plus
JLOC1	JLOC1_38430.3	3135	8e-25	1310 - 1369	100	60 / 60	plus
JLOC1	JLOC1_38430.2	3138	8e-25	1310 - 1369	100	60 / 60	plus
JLOC1	JLOC1_38430.1	3134	8e-25	1310 - 1369	100	60 / 60	plus
Harvest21	ABC19073	1390	3e-25	1291 - 1350	100	60 / 60	plus
Harvest35	U35_8860	1404	3e-25	1305 - 1364	100	60 / 60	plus

Contig Sequence (1404 bp)

>U35_8860 1404 Hv_44K_v2
AAAAATCTCCAGCAAGACCACTACTCCACCTTCTCCTCCTCCCTCCCCCCCTTCGTCTTC
CCCCGGCCCGTTACGCTCCCTACCCGCTCCTCCCAATCGCCGCCGACCTCCTCCTCCTCC
TCCGCAGCAGTCGCCTCCTCCTCCGCCGTCCAGATCCGTCCTGCCGCGCGGCCGGCCACG
AGCCCGGCTCCTAGATTCTCGAGCGCACCTCCCCCGCGAGATCCGGCACCGCCGTCTCGG
CGCCGCAGCCCCTTTGTCCGGAGGCGATCCGCCCCTCGGACCACCGCCGTCGCGCCTTCC
AGCTTATAATATTCTGCCAGACCTCTGCAGTGTACTTGCTGCGAGCCAGCTCGGGTGGCT
TTGTGGTATCTGCTTCATTACCGCCTTAGCCTATATTTTCCATTGGACCGAAACCAAAGG
ACGTTTGGAATTGGCAATATGAACTAAAGAATCATACAACGTCCATGCATTCATCTACAG
TCGTAACCATTCTGATGGTTATTCTTGGGCACACCTATATGGTGTTCTTGACACTGTCTT
CTGTGCTCCAGTGCTATGCAAACTCTAAGATTGCTGCTGTTACTTGCGTCCTATAAGTTT
GGACCATGGCGCATGCACCACGTAACAGGGGGTTTCCAACTGATCCCAAGGAATATAAGT
TATATGAGGAAGTTGGAGAAGGAGTTAGTGCCACAGTTTACAGGGCTCTTTGTGTCCCGC
TCAATACTTTTGTTGCCATCAAAGTTCTTGACCTTGAGAAATGCAGTAGTGACATGGATG
GAATAAGACGGGAAGTACAAACCATGAGTTTGATTAACCATCCGAATCTTCTTCGCGCAT
GCTGTTCATTTGCAAATGACCATCATCTTTGGGTTGTCATGCCTTTCATGGCTGCTGGAT
CTGCCCTGCACATTATAAAAACTAATTTCCCAGATGGGTTTGAGGAAGCAGTCATTGCCA
CACTTTTGCGGGAAGTTCTCAAAGCTCTTGTCTACCTACACTCTCAAGGGCATATTCACA
GGGATGTAAAGGCTGGAAATATCCTAATAGATACAAATGGAGATGTTAAGCTAGGAGACT
TTGGAGTATCTGCCTGCATGTTTGACACAGGGAATAGACAACGAGCTAGAAATACTTTTG
TTGGGACCCCTTGCTGGATGGCTCCTGAAGTCATGCAACAACTGCATGGTTATGATTATA
AAGCTGATATCTGGTCCTTTGGGATAACGGCATTAGAACTAGCACATGGTCATGCTCCAT
TTTCGAAGTACCCTCCAATGAAGGTGTTGCTTATGACGTTGCAAAATGCACCACCAGGTC
TAGACTACGAGAGGGACAAGCGATTTTCGAAGTATTTTAAGGACTTGGTTTCTACATGCT
TAGTCAAGGATCCACAGAAGCGTC

Homology of Contig U35_8860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g29120.2	694	7e-167	protein\|STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Brachypodium v1_2	Bradi1g42257.1	662	8e-179
Arabidopsis v10	AT5G14720.1	674	8e-155	Protein kinase superfamily protein \| chr5:4748212-4752642 REVERSE LENGTH=674