barSeed - Barley Seed Development Database

Probe CUST_19959_PI390587928

Source Contig U35_8867

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19959_PI390587928	Hv_44K_v2	CTAGTCTGAATTTGCAGATCCTGTGTAAATGTTATACTTTAAAAAGAGCCAGTGTAGAAG	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18933.2	3981	3e-21	3853 - 3912	97	58 / 60	plus	ABC24487
MLOC	MLOC_18933.1	1874	3e-21	1746 - 1805	97	58 / 60	plus	ABC24487
JLOC1	JLOC1_13118.1	1874	2e-21	1647 - 1706	97	58 / 60	plus
Harvest21	ABC24487	599	3e-25	24 - 83	100	60 / 60	minus	ABC24487
Harvest35	U35_8867	655	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_8867 655 Hv_44K_v2
TAGGGCGAATTGGGCCCTTCCGAAAATGCTCGAGCGGCCGCTGGATGACTATAGCCTTGA
GATGAATTCATTCTAAGCTATGGAAGGAGTGCCATTCCAGAAGTTTCATCTGTGAGAGGT
TTATTGTGTTCTCTCACGAAATGCAACTCGAAGCACAATGTAACTAAGCAATGGAGTAGA
AGTTCTCTGGCTGCCTATTTTACTCCAGCCTGCACCTACCTGAGAGACTCGGACTAGTTA
GTAATGTATGAATGTGGAGGAAAGCTGCGTGCATCCTCTGGGCCTGTTCGGAACCTCTCA
ACTTGTCAATGTTGGAGCTGCTAGACAAGTCATCACTGAGCCTGCTGGCGTCCCTGCAAG
AAAGCCCTCATCTTCGCCAGATGTGGCGGCATCACGGGTAGATCCTCGTCAAGCTGGTGC
TAACACCATGTCGTTTTTTCGCTTTGGATTGTAGCTCTTTTGGGAGAGAAGTTTGCAACG
TTCAGTAGCATGAGATGTACATGAATATCTGTAAGTTCGATTCTAGTCTGAATTTGCAGA
TCCTGTGTACATGAATATCTGTAAGTTCGATTCTAGTCTGAATTTGCAGATCCTGTGTAA
ATGTTATACTTTAAAAAGAGCCAGTGTAGAAGAAGCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None