barSeed - Barley Seed Development Database

Probe CUST_19957_PI390587928

Source Contig U35_8869

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19957_PI390587928	Hv_44K_v2	TGTGCTACACCATTTGTCCCCTCATTGCAGAAGAAAGTTGGGTAGCAAAATCAAGCGTTC	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11036.12	2793	2e-24	693 - 752	100	60 / 60	plus	ABC14530
MLOC	MLOC_11036.5	2799	2e-24	1994 - 2053	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.15	1095	2e-24	864 - 923	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.11	2098	2e-24	1221 - 1280	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.4	1540	2e-24	1308 - 1367	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.14	2008	2e-24	1118 - 1177	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.8	2364	2e-24	1312 - 1371	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.9	2352	2e-24	1300 - 1359	100	60 / 60	minus	ABC14530
MLOC	MLOC_11036.1	6158	2e-24	4175 - 4234	100	60 / 60	minus	ABC14530
JLOC1	JLOC1_7265.1	4311	8e-25	2504 - 2563	100	60 / 60	minus
Harvest21	ABC21176	872	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_8869	906	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (906 bp)

>U35_8869 906 Hv_44K_v2
GCTCTCCCTCGTCCTTCCTCCTCCTCTCTCCGTTTTGGTGGTGCAAGTTGTTGGTCGCAG
TGGAGTTGGCACAGGGCGTTGCCTTTTTGGGCGCACAACAAAGGCATAGGCTGATAGGCA
GAAGGAGGAGGAGGCTTGTGCTTCTCTCGCCTTTGCGGGGCCGCCGCTTTTGGGCCTCCT
CCTTCCCATTGGAGCGTACAAAGCTGGGCGGCACCATTTAAAGGAAGAACACCAGGAGGA
GGAGGAGATCAAGCCAAACCCCAAAGAAAGGAACAAGAGTGAGAGCGCACCAACACCCCC
AAACACCATCCATCGCTAGTGCTGCTACACTGCGCTCCGTCCCAGCGAGAGGGGGATCGC
GCCGCTGTTGCTTCTGCCCTGCAGCCCTGCCCTTTCTCAGCCTGCCTATCGGCGGCTCCT
TCCCGACCGCGAGGACCGACGGACGGACGGAGAAAGTGTAATCTGCAAGCTTCTCAAATC
TGGGTACTGTTTGTAAAAGAGGAGTGGCCTTTTTTCAGTAAAGCTTTGGACATTATCTTG
TACTAGTTTGGATGGCATCCATGGTTACTCTGATGTGTTCGTGGAGCCCTGGATGCCAAG
TTCACCATTGATTCGCCAATGTGGAGATGTAACTTGTGCTACACCATTTGTCCCCTCATT
GCAGAAGAAAGTTGGGTAGCAAAATCAAGCGTTCTTCCGTAGCTTGGTTAAGTGTTCGTG
AGGCTCAAGCCGGAGCATCAAATTTTGTCTGGCATGCAGATGTCAACAGATCCTAACCAC
TACGGCGTATTTCCGCATTCATTCTTTGGCCAACATGTTGTTTCATTTCAAACAAGTGCA
ATTACCAATGGGCCGGGAGCCATGCCGGTCTGCCTGGACACTTCTAGTGGGATAAATGGT
AATCTG

Homology of Contig U35_8869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None