barSeed - Barley Seed Development Database

Probe CUST_19952_PI390587928

Source Contig U35_8874

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19952_PI390587928	Hv_44K_v2	AAATCTTCCCTGCTGGTCAGCAGTTCCAAAGATACAAAGGTGAAAGTGTGGGACACAATG	831	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58430.6	2029	2e-24	861 - 920	100	60 / 60	plus	ABC20947
MLOC	MLOC_58430.7	2021	2e-24	1070 - 1129	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.8	2669	2e-24	918 - 977	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.9	1689	2e-24	1046 - 1105	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.1	2281	2e-24	1122 - 1181	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.3	2493	2e-24	1568 - 1627	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.4	2685	2e-24	1568 - 1627	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.11	3033	2e-24	1039 - 1098	100	60 / 60	minus	ABC20947
MLOC	MLOC_58430.10	2509	2e-24	1039 - 1098	100	60 / 60	minus	ABC20947
JLOC1	JLOC1_37958.2	2452	8e-25	865 - 924	100	60 / 60	plus
JLOC1	JLOC1_37958.1	2004	8e-25	865 - 924	100	60 / 60	plus
Harvest21	ABC20876	896	3e-25	832 - 891	100	60 / 60	plus
Harvest35	U35_8874	896	3e-25	832 - 891	100	60 / 60	plus

Contig Sequence (896 bp)

>U35_8874 896 Hv_44K_v2
GCTCCCCCCTTCCCCGCGCGCCTGAGACGGTGGCCACCGTGATACGTTCTAGGGTTCAGG
TCGCCGGCGATGTCGGCGCCGTTGCCGGGGAGGACGCTCGTCGATCTCGATGGCGACGTG
CTGGCCCACTGCGCGCGCCACCTGGGCGCCCGCGACGTCGCCAGCCTCGCCATGGCCTGC
CGCCCGCTGCACGCCATCGCCTACTGCGACGCCGTCTGGTACCGCCTCTACAGGAAGCAA
TGGCCGTTTCAACAAATGCCTTATGGAGCTTTGGGGATTAGAGAACTATATATTCGGAGG
CACACTGAAGTACATCAAATGAAGTTTGATGATCCCTTATCATCTATTTATTATCTAGAT
CCCACGAAGCCAACACCAAGCCATCTAATGCTTGATAGGAATGGTGTTTGGTTCTCTCAA
GGACCAGTAGCCAAAAGATTGAGGATTAGTATACTGGACATGGAATTGGTGGAATGCTAC
AGGTCTCATAGTGCGAAGATCACTTGTATGAGATTATTCCCACTAATCGACACCCCGCTG
TATCGAAGTGATGCACATAGAAATGAAAAGGCATTAGTCACTTCAAGCACAGATAGAACA
GTCCGTCTTTGCTGGAAGGGTCAATCACGCTGTTACAAGGGCCATTCAGGACCTGTCACT
GCTGTGGCTGACAAATTGCTTGACGATGGTGAATTTAAAATACTTGCAACTGGTGGTGAA
GACTGCACCATTCGCCTTTGGTCTATGAATACAAGAGCAAAAAAACACCCTCTAATATCA
ACTTTGTATGGGCATGAAAAGACACTGTCACTTTTGTCTGTTGCTTGGCATAAATCTTCC
CTGCTGGTCAGCAGTTCCAAAGATACAAAGGTGAAAGTGTGGGACACAATGGCACC

Homology of Contig U35_8874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09020.1	513	4e-150	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g05487.1	491	4e-166
Arabidopsis v10	None