barSeed - Barley Seed Development Database

Probe CUST_19938_PI390587928

Source Contig U35_17162

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19938_PI390587928	Hv_44K_v2	GTAGCCTAGATTCCTGATGCTCAAATGTTCATGGTTTATTTGTTCCTTTTCGGTTTAAAA	1726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249562.1	2209	9e-22	2034 - 2092	98	58 / 59	plus	ABC06607 ABC06608 ABC48321
MLOC	MLOC_21577.1	1224	9e-22	1106 - 1164	98	58 / 59	plus	ABC06607 ABC06608 ABC48321
JLOC1	JLOC1_14967.4	1120	5e-22	743 - 801	98	58 / 59	plus
JLOC1	JLOC1_14967.3	1232	5e-22	855 - 913	98	58 / 59	plus
JLOC1	JLOC1_14967.2	1435	5e-22	1058 - 1116	98	58 / 59	plus
JLOC1	JLOC1_14967.1	1402	5e-22	1025 - 1083	98	58 / 59	plus
Harvest21	ABC06607	1799	3e-25	1727 - 1786	100	60 / 60	plus	ABC06607
Harvest21	ABC48321	649	2e-22	87 - 145	98	58 / 59	minus	ABC48321
Harvest21	ABC06608	844	2e-22	159 - 217	98	58 / 59	minus	ABC06608
Harvest35	U35_17162	1799	3e-25	1727 - 1786	100	60 / 60	plus
Harvest35	U35_47348	649	2e-22	87 - 145	98	58 / 59	minus
Harvest35	U35_17163	844	2e-22	628 - 686	98	58 / 59	plus

Contig Sequence (1799 bp)

>U35_17162 1799 Hv_44K_v2
CGCCGACGCCGTTGGTTCTACCAAGGATTCGGCGGTGCCTGAAGAAGGGGGTGCCGAGGA
AGTCGGGGGGGAGCACAAGGGCGACGCCCTAGTGGATGCGGCTGCCAGCACCGTTGCGTC
CCTTGCCTATTTGGGGAAGGTCGAAGCCCAAGGTGTGGAGGAAGAGGTAGAGGAGCGTGT
AGGCGATGCTCTGGTGGATGTTTCTGTGGCTCATCAGGTCAAGAGTGAGGCCCAGGGAAA
TGAGGGTGCGGAGACGGAGTGCGAGGCCCAGGGAAATGAGGTGGTGGAGACCAAGGGCGA
GGCCCAGGGAAACGAGGGGGCTGAGATGAAGGATGACACCCAGGGAAATGAAGCTGCCGA
GATGGATGTTGATAAAGCGGGAAATGGAGATGAGCACACAGAGGTCAGGGTGGATGGTGA
CAAGGGCAGCTTGCTCAAAGAGGAAAGCGACAATGGTGGAGATAATAAGAAGGATGCCAA
TGGTGAGGATGAGCTAGGGTCGGCACTAGCTGGGGAGGATGAAAACCACCACTTGTCTGA
CAAGGTCTCAAACAACTCCTTCATGTTTGATTACACTCGTGGGGGCGATGACTCGGGGAC
GGAGGAGGAGCAGGCTGAGTTTATCAAGGAGCTTGACCGGTTCTACACGATGAAACTAAT
GGAATTCAAGCCCCCCAAATTTTATGGTGAAGGATTGAATTGCCTCAAGTTGTGGAGACA
AGTAACAGGATTGGGTGGCTATGATCAGGTGACATCATGCAAACTGTGGCGTCAAGTGGG
AGAGTCATTCAAACCTCCGAAGACATGCACAACCGTTTCATGGACCTTCCGTAACTTCTA
TGAGAAGGCACTCCTTGAATACGAGAAACACAAAATTGAAACAGGCGAGTTCCAAGTGGC
TGCATCTACTTTAACTGAGCGAATTGCTTCTGATAGTCAGGTGGGTGGAAGCCATGCATC
AGGATCCGGAAGAGCTAGAAGAGAATCTGCAACTCGTGCCATGCAAGGATGGCATTCACA
GCGCTTGCTAGGCAACGGTGAAATTGCTGATCCAGTAATTAAGGATAAAGCGGCTATGCC
TGTCTTGAAGAAGGATAAAAATCCGAAAAGCAGTGGTCCGGCCAAGAGGAAAAGGACACC
TACCTTGGAAGATGAAAAGGCGATGCCATACAAGTCTGAGAAGCTACAAAATGACTCGAC
AGTTATTGACATGGGCCCTCCTGCTGATTGGGTGAAGATAAATGTTCGGAGAACTAAAGA
TTGCTATGAAGTCTATGCATTGGTTCCTGGCCTTCTTCGTGAAGAGGTACATGTTCAGTC
AGATCCTGCTGGCCGCTTGATAGTTACAGGAGAGCCTGAACAACTAGATAATCCTTGGGG
TGTTACTCCATTCAAGAAGGTCATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACCTC
AGCAGTTGTCACTCTCCATGGGCAATTATTTGTTCGTGCACCATTTGAGCAGTCAAAATC
ATGACACTCTACTTGACAAAGCAGAATAATACATGTTGCCTTGCTGGTGGGATCATATGA
TGGTTTGCAGGTTGCCCACCCCGATCTTTGTTCGACTAGTTCATTACTGCTTCAAGGCTC
TTCAGCGGTGTTGTATGTCCTGTGTATTGATTAATTCTAACTAATTAGATGGCTTAGTAC
TGTGCATTGCCTGTGACATTTAGCGTAAGTTCCAACCTCCAGGCCTGTAGCCTAGATTCC
TGATGCTCAAATGTTCATGGTTTATTTGTTCCTTTTCGGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41730.2	462	0.0	protein\|ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g55550.1	544	0.0
Arabidopsis v10	AT2G17410.1	786	3e-124	ARID/BRIGHT DNA-binding domain-containing protein \| chr2:7559869-7563474 FORWARD LENGTH=786