barSeed - Barley Seed Development Database

Probe CUST_19936_PI390587928

Source Contig U35_17163

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19936_PI390587928	Hv_44K_v2	GGGTATGCCGTGTAACTGCTGCTGTTATAGAAAACCATTGCATTCGCCTGACTGAAAAAA	774	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.174	1.354	1.231	0.963	0.409	0.424
Raw	1805.683	3216.229	2582.800	3185.532	479.114	531.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_14967.4	1120	1e-23	890 - 947	100	58 / 58	plus
JLOC1	JLOC1_14967.3	1232	1e-23	1002 - 1059	100	58 / 58	plus
JLOC1	JLOC1_14967.2	1435	1e-23	1205 - 1262	100	58 / 58	plus
JLOC1	JLOC1_14967.1	1402	1e-23	1172 - 1229	100	58 / 58	plus
Harvest21	ABC06608	844	3e-25	11 - 70	100	60 / 60	minus	ABC06608
Harvest35	U35_17163	844	3e-25	775 - 834	100	60 / 60	plus

Contig Sequence (844 bp)

>U35_17163 844 Hv_44K_v2
GAAGCTGTGCCAGCAAACTCCTTATTCTATCTAAAATGTGTAAATCTCGGTTAAATCATG
TGGCTATTGACCTATTATGTGTTTAGAAACAAGCATGGCTAACCTGGAAATCAGTTGGAT
CTTTTTATAGAAAAGAAAATTTATGTTTCCTTGCAGAAAGATTGCTATGAAGTCTATGCA
TTGGTTCCTGGCCTTCTTCGTGAAGAGGTACATGTTCAGTCAGATCCTGCTGGCCGCTTG
ATAGTTACAGGAGAGCCTGAACAACTAGATAATCCTTGGGGTGTTACTCCATTCAAGAAG
GTCATTAGTTTGCCCTCCCGCATTGATCCTCATCAAACCTCAGCAGTTGTCACTCTCCAT
GGGCAATTATTTGTTCGTGCACCATTTGAGCAGTCAAAATCATGACACTCTACTTGACAA
AGCAGAATAATACATGTTGCCTTGCTGGTGGGATCATATGATGGTTTGCAGGTTGCCCAC
CCCGATCTTTGTTCGACTAGTTCATTACTGCTTCAAGGCTCTTCAGCGGTGTTGTATGTC
CTGTGTATTGATTAATTCTAACTAATTAGATGGCTTAGTACTGTGCATTGCCTGTGACAT
TTAGCGTAAGTTCCAACCTCCAGGCCTGTAGCCTAGATTCCTGATGCTCAAATGTTCATG
GTTTATTTGTTCCTTTTTCGGTTTAACCATCAAAGGATGATGATTTGTAGTGTTGTAGCT
TTATTCCTAATACTTTGAGTTTGTCATCATACTTCCGAACACGGATGAAATTCTGGGTAT
GCCGTGTAACTGCTGCTGTTATAGAAAACCATTGCATTCGCCTGACTGAAAAAAAAAAAA
AAAA

Homology of Contig U35_17163 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None