barSeed - Barley Seed Development Database

Probe CUST_19927_PI390587928

Source Contig U35_17169

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19927_PI390587928	Hv_44K_v2	CCCCCTGCTTCTTCCATGGAACTGCACGCATAAACAAATAAAAACTAGTCATAACATGAT	1329	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.666	1.833	1.590	0.641	0.068	0.052
Raw	47584.433	73182.433	60407.500	35822.500	1503.453	1225.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45128.3	1302	2e-24	328 - 387	100	60 / 60	plus	ABC05257
MLOC	MLOC_45128.1	2124	2e-24	682 - 741	100	60 / 60	plus	ABC05257
JLOC1	JLOC1_29289.1	1133	8e-25	456 - 515	100	60 / 60	plus
JLOC1	JLOC1_29290.1	698	8e-25	217 - 276	100	60 / 60	minus
Harvest21	ABC05257	2221	3e-25	2088 - 2147	100	60 / 60	plus	ABC05257
Harvest35	U35_17169	1463	3e-25	1330 - 1389	100	60 / 60	plus

Contig Sequence (1463 bp)

>U35_17169 1463 Hv_44K_v2
AGAGAGAGAGGAAAAGGGTTTCGAGATGGAGAACGGCGACGAGACCTTCGCGTCCCCGAC
GGCGGCCGCCGCGGAGTTCGACCTCGGCTTCGGCCCCGCGCTCACCAACGGCGGGGGCCA
CGCCAAGGCCTACGACCCGGAGGAGATGGACGCGCTCCGCGCGGCCAAGCACGGCCTGGA
GGAGAAGCTGGCCGAGGTGCGCCACGAGAACGGCTTCCTCTCCGCCGAGGCCGCCCGCCT
CGAGGCGCTCGTGGCCGGGGCCCGCGAGGACATCGCCGCCGCCGACCGCGCCGCCGCCAA
GGCCGAGGGCGAGGCCGCGGGGCTCCGCGCCGAGGTCAAGCGCCTCCAGGGCCTCCTCGC
CGCCTTCGACAGCTCCGACCGCGCCGCCGACGGCCCCCGGGGCGCCGGCGGGGACCTGGC
CACCGCTCACCAGGAGAAGCTCGCCCTCGAGGAGGAGATCAAGGCCCTCAAGGCCGCCGC
CGCCGCCGCAGCATCAGACAAGGAGGGGAAGGAGGAGGAGGCTGCCCCCTCGGCCAAGGA
AGGGCTGGTGGCTCCACACGGGACGGTGGCAGCCGCCGCCGCCGCTGGAGCCGCCGCCAC
CGCAGCCATCGCGGTGGTTCTCCTCAACCTCAAGAGGTAATCTGGTGCGCTCCGAGACGA
GGCGCTGCAAGTTTTGCTCTGCTACCATGTATGGGGCTCGTACGAGGCTGGATAAATCCC
TTTCTGTCTGTGGCGCTGTTATTACTGGACTGGTAGTGGTATGGATTTACGTTCTGCTGG
TTAGTAGCTTGATGAATCTGGAGAGTTTGGGGCTTAATCGCGAGCCCTTATCGTTTATGC
ACTTTGCCTTGCCATGGTAATAATATGTGAAGACTACGTGAGCCATTTGTAGCCTGCTAT
TATGCTGCCGCATCTTATTTCTGTTCTTATCACTTCATTGGTTAAAAAGTCCAACTCTCA
TCTTGCTAGGTCACTTGGCGCCCCGGCGGCCGTAAACAAATACCCAACATGAGAGGCGGC
GGCTTGGTTTACGCGGTGGCAATCCTCCTGTTCATCGGATACCTTGCAGTCACAGCACAG
TGTCGTTTTGATGCTGGAACAAGGAGCTCCTACCTAGAGGATCATGCCGCCGGAGCAGCT
ACTATGGTCAACACGACATCGTCACTAGACGAGAGCAAGCTTTCCATAAAATTCTGCATC
AAGGCGGGATGTAGTCATGCTGATGGCCTTTGGAAAACCTGCTTCTGCTGTGACATTCTG
CCGGACAAAAAGTGCTTCAGTTCGGAGGATGAGTGCAGGAACAAATGCCCCACCTGTCAC
CCCGAGTGTCCCCCTGCTTCTTCCATGGAACTGCACGCATAAACAAATAAAAACTAGTCA
TAACATGATTTTTATGTGAGGAAACTATAATAGATTTATGGATGTGCCATACCTTTACTG
ATAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None