barSeed - Barley Seed Development Database

Probe CUST_19924_PI390587928

Source Contig U35_29141

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19924_PI390587928	Hv_44K_v2	TGCGTGCGTGATGATTTGTGATAGTTGATTGTGATTATTGGAAATGGATGGTGAAGGTCT	200	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54933.4	6620	2e-24	4929 - 4988	100	60 / 60	plus	ABC09200
Harvest21	ABC09201	653	3e-25	183 - 242	100	60 / 60	plus
Harvest35	U35_29141	671	3e-25	201 - 260	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_29141 671 Hv_44K_v2
TGCAGCAATTCGCACGGGCATCATCGTCTCCGTCTCCTCAAATAATCTTTCGCTAGCAAT
TCTTGTCAGGGCGACAATGGCTGACGAAGTTCAGGCGCTCACCAAGGCCTTCTCAGGTTT
GTTAATTACATCGATAATCGCTGACGACTCCTAGTCCTAGGAGGACATTGTGCAGCGATC
ATACTCGTAGCATTGTTGTTTGCGTGCGTGATGATTTGTGATAGTTGATTGTGATTATTG
GAAATGGATGGTGAAGGTCTGGGGGGTCTGGGCGTGGACGAGCGGACGATGGTGGCGGCG
CTGGCGAACTGGCGGAAGCAGCCGGAGAAGCGGTCGGGGTTCCGGAAGAGCTTCCCGGGG
CTGTTCAAGGAGCACGGCGGCGTGATGGAGCGGTGCGAGGACGAGTACATGCTGCACCTG
GCCGCCGAGTTCTCCCGGTTCAAGAACCTGATGGTGCTGTGGGCGATGCACCCGTGGGAG
CGCGACGCCCGCCTCGCGCACCACGTCCTCCACCAGGCCCACCCCTCCGCCATCGTCGTG
GAGATCGCCTGCACCCGCTCCGCCGAGGAGCTCCTCGGCGCGCGCAAGGCCTACATGGCG
CTCTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAAGGACAAGCCCTACTGC
AGCCTGCTGGT

Homology of Contig U35_29141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g31750.1	320	1e-79	protein\|annexin, putative, expressed
Brachypodium v1_2	Bradi2g26760.1	317	2e-80
Arabidopsis v10	None