- Probe CUST_19919_PI390587928
- Source Contig U35_29145
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19919_PI390587928 | Hv_44K_v2 | GCCATCCTGATATCGTTTTTGGCTTTCCCCTTCCCGTAGTTTAGGATTTTTATGCAATTT | 354 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69140.1 | 2103 | 2e-24 | 384 - 443 | 100 | 60 / 60 | plus | ABC00275 ABC00309 ABC00398 ABC00501 ABC00925 ABC01000 ABC34629 ABC37572 ABC37604 ABC37614 ABC47640 |
| JLOC1 | JLOC1_45803.2 | 1855 | 8e-25 | 374 - 433 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_45803.1 | 2127 | 8e-25 | 386 - 445 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51505 | 520 | 3e-25 | 230 - 289 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28340 | 694 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00851 | 2008 | 3e-25 | 1579 - 1638 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00501 | 867 | 3e-25 | 372 - 431 | 100 | 60 / 60 | plus | ABC00501 |
| Harvest21 | ABC00092 | 2014 | 3e-25 | 368 - 427 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49658 | 520 | 3e-25 | 230 - 289 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_29145 | 694 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13829 | 2028 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13664 | 699 | 3e-25 | 617 - 676 | 100 | 60 / 60 | plus |
Contig Sequence (694 bp)
>U35_29145 694 Hv_44K_v2 GCAAGAATTTCCTCCCACCCCCCCACCGCCTCGCCGCCGCCACCGCAGCCAGATAAGAAA AGAAGAAGAAAAGAGAGAGAAGGACTCGTCGGGAGGGCTCGAGATCTGTGTCGGGAGAGG GGGGAATTCTTGAGATCGGAACCGGAACAAGTGGGCGCGCTCGGGAAGGGGTTACCATAC CAATTTTTCCCAGGAACCCTTAGTGAATGTTCTAATGGAGTCAAAGGGTGGCAAAAAGTC TAGCAGTAGTAGTTCCCTGATGTACGAAGCTCCCCTCGGCTACAGCATTGAAGACGTTCG ACCAGCTGGAGGCGCAAAGAAGTTTTCTGCTGCATATTCAAACTGCGCGAAGAAGCCATC CTGATATCGTTTTTGGCTTTCCCCTTCCCGTAGTTTAGGATTTTTATGCAATTTTATTCT GACTCTTTTCTCCCTCTGTTCCTCTCTGCTCTGCTTTCTGACTCAAACTGCAACAATGGC CGCCCCGACCTCTGCGATCGGGTTTGAGGGCTACGAGAAGCGCCTCGAGATCACCTTCAA CGAGGCATCAATCTTTGCTGACCCTCATGGTCGTGGCCTGCGCGCCCTCTCTAGGGCCCA GATTGACTCTGTTCTTGATCTTGCACGGTGCACCATTGTGTCCGAGCTCTCCAACAAGGA CTTTGACTCGTATGTGCTATCTGAGTCGAGCCTG
Homology of Contig U35_29145 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |