barSeed - Barley Seed Development Database

Probe CUST_19916_PI390587928

Source Contig U35_29146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19916_PI390587928	Hv_44K_v2	ATTGGTAGGGACAGGAGCCCCCTAAGGAAACAGTACATTGAACTGATTCTACCACCATTT	651	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2174.3	3919	2e-24	1548 - 1607	100	60 / 60	plus	None
MLOC	MLOC_2174.1	4312	2e-24	1555 - 1614	100	60 / 60	plus	None
MLOC	MLOC_2174.2	4309	2e-24	1552 - 1611	100	60 / 60	plus	None
JLOC1	JLOC1_1308.4	4295	8e-25	1544 - 1603	100	60 / 60	plus
JLOC1	JLOC1_1308.3	4302	8e-25	1551 - 1610	100	60 / 60	plus
JLOC1	JLOC1_1308.2	4302	8e-25	1551 - 1610	100	60 / 60	plus
JLOC1	JLOC1_1308.1	4303	8e-25	1552 - 1611	100	60 / 60	plus
Harvest21	ABC28342	714	3e-25	652 - 711	100	60 / 60	plus
Harvest35	U35_29146	714	3e-25	652 - 711	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_29146 714 Hv_44K_v2
GGGCGCCTTACAGCAGCAGCAGCAGCTGAGCCATATGAATCTGTCAAGCATGCCTTTGTG
TCTTATGGGAGCTGCATTGCAGATCTTGCAGAAAGCTGGAAATACAGAAGCCGCTTATGG
TACGGTGTAGGCGTTCCATCCAAATCTGATTTATTTGGTGGTGGTGGAAGTGATTCAGAA
TCTTGGAGATCTGCTTTAGAGAAGGATTCAAATGGGAATTGGGTTGAGCTTCCACTTGTG
AAGAAATCACTCGAAGTGCTGCAGGCACTCTTGTTAGATGATTCTGGACTTGGCGGTGGT
CTTGGTATTGGAGGGGGGTCTGGCCCTGGTATGGGGGTTATGGCTGCACTTTATCAGTTG
CTAGACAGTGATCAGCCATTTCTTTGCATGCTCAGAATGACTCTTGTTTCGATGAGGGAG
GATGACAATGGTGAAGGTGATGCTCTTTTGAAGAACACTAGTATAAAGGACGTCATATCA
GAAGGAAGCCTGGGGCCATTTGATGGCAACAGTCACTCATCTACAAGGAAACCCCGGCCT
GCACTTCTTTGGAGTGTGCTTGGCCCAATTCTGAACATGCCAATTACCGAGTCGAAGAGG
CAGAGGGTGTTGGTTGCTTCCTCCATTCTCTATTCAGAGGTATGGCATGCTATTGGTAGG
GACAGGAGCCCCCTAAGGAAACAGTACATTGAACTGATTCTACCACCATTTATA

Homology of Contig U35_29146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g46894.1	2198	6e-115	protein\|beige/BEACH domain containing protein, expressed
Brachypodium v1_2	Bradi5g17947.1	2909	1e-123
Arabidopsis v10	AT2G45540.2	3001	3e-90	WD-40 repeat family protein / beige-related \| chr2:18757881-18772229 REVERSE LENGTH=3001