barSeed - Barley Seed Development Database

Probe CUST_19908_PI390587928

Source Contig U35_17170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19908_PI390587928	Hv_44K_v2	TAAAATGCACCTCTCTCGGCATTTCATTGAACACAACATGTGCAACCTCGCTCCAAAAAA	2591	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.858	1.909	1.277	0.825	0.372	0.472
Raw	488.388	780.764	463.536	456.569	74.175	101.694

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252031.1	1338	9e-22	1255 - 1309	100	55 / 55	plus	ABC07258
JLOC1	JLOC1_7031.1	859	5e-22	566 - 620	100	55 / 55	plus
Harvest35	U35_17170	2660	3e-25	2592 - 2651	100	60 / 60	plus

Contig Sequence (2660 bp)

>U35_17170 2660 Hv_44K_v2
CCAGATACCTCCCCGGCGCCCCCTCCGGTTGTGTCGGCGACCCCTCCCGAGTCGGCGGAG
GCTAGTGTTACGGTTGCGGAGGATGGTGGCGGGAACGACAAGATGGCGGTGGAGGATCTC
GGTGAGGTGGGGCGTGAGGAGGCCACCGGGGCGGAGTCCCTAGAGGAGGAAGCCTACGAG
GAGGAGCCGGATGAGGAGGTGTTGGAGGAGGAGGACCCTGATGCGGAGGATGATCCCGAG
GAAGCGGAGGAGGATCTAGAGGACGCGGAGGAGGATGCTGAGGACGCTGAGGAGGAATCC
GATGAAGTCGAGCATGATGAGAAGGATACCGTTCTGGCGGCTGGGTCGGAGAAGACGGCG
ACTGTGGATGGCGGTGATGAGGAGAAATCAATGGTAACGGTATCCAAGGAGGGCGGCGGT
GAAGTTACAGGGTTGGAGTCTGCCGTGGTAGAGGAGGCCGCTAATGTGGATGATGGACTA
GAAGAGGCAGAAGAGGAGGAAGCTGAAGAGGATGCAATGGAAGAGGCAGAAGAGGAGGAA
GTTGAAGAGGATGCAATGGAAGAGGCAGAAGAGGAGGAAGTTGAAGAGGATGCAATGGAA
GAGGATACTACAGAGCTCCCGGGAGAAGGTGCCGCCCCAGATGACATGAATGAACTATCT
GAAGAAGAACATGAAGAATCTGGGCATGAAGGTACAAATGGGAATAACGACGAGGATGGT
GTTGCCTGCCAGTTGAATGTCCATTCTGAGGTGCAGAATGGTGAACTTGACTCCTCATTG
CTCACACTGGGTTCAGTTTCAGTGGGCAATGCTAAAGACTTACAAATATTTCTTCATGGA
TTGCCTAAGGGTTGTCCCGAGAAAGACATTACAGAGGTCTTTTCTCAATTCGGAGAGATC
GAATCTATTAAAAGAATTAGAAAAAAGAATGGCGGCGTTGCATTCGTTCGTTATATGAGC
ACTGAAGCTGCAAAGAAGGCTCTTGCCGAATTTAAGGAGGGAGCTGAGGTGACAGGGGAA
ATGGTTAAAGTATCAGCTTCTAGAGGTGATAATACTCTTTACCTTAGAAACATCTGCAAG
AGCTGGACAAAAGAGCAGGTGCGAATCTCCTTGAGAAGTATCGGTATCGATGGATTTGAT
ATGAGTTTACCCGTTGATCCTGAAATTGGAGGACAAAACCGAGGGATTGCTTTTCTCAAA
TTTGCTTCGCCTGACAATGCCAAAGCTGCATCTCAGCTGCTACAGCAACCGGATCCATTG
ATTACCATTGTTAGAAGTGTGAAAGAATCTGCTCAAATCCCTACAGAATCAAGTCAGGAG
CTTGCTATGCAGATGCAGGTTAAAACAGTATACCTCGAACATATTCCTCTTTCTTGGGAT
AAGAGCAAAGTTAAAGAATGTTGCAAAGCATATGGGGTGATTCAGGATGTTCACATTTTA
AAGAAGTCAAAAGCAAAAATTTCTTTTGTCGAATTCTCATCCAGGAAGAGTGCATTAGCT
TGTGTGGAAGGAATAAACAGTGCCAATATTGGTGGTGAACTTAAGCTGGCTGCAAGTCTT
GCTCGACCACGTCGGGAAATACAACTTGACAAGAAGAGTGCTAAAGGTGGGGTCAAGGTC
AATAGTGATGCAACTTCTAAAGACACCAACAATTCTATAAAGAAAAAGAACCAGAATAGG
GAGGTCGTAGTGAAGGATTCACCACATAAATTGCGAAAAGGTGATGTGAGCAAGCTGACC
TCACATGTTGATGTGAAAGTACCACAATCATCCAACCCATCTAAAGGCAAACGGAAAGCC
GGAAAGACTGAAAATACCGCTGTAAATGAAAGGCTACCGAAGAGAGCCCGGAAGAATCGT
GATGTTCTGACAAAACCTTCCAACAGAACATCTCATGGTGGTTATGCTAGAGTTCCCTAT
GCAGGAGAATCTTCTGGAAACATTAAACGCCCTGGGCGATCTCGATATGTAACTGGCAAC
CAATCTTACCCTATTGCGGGCGCATCTTCCAGATCTAAACCAAATGCTCGTGACCTGGAA
CCTCATGCTGGATACATCCCGCCTACAAATCGTGTTCGTGCACCTGCAAATCATGTTCCA
GTCACCTATGTGTATGATCAGCCGAGAAGCGCACCATCCACTATCCATCACATTGATGAT
CTTCCTCATGCTAGAGAAATAGCAGTTCCACCACCAGCCTATGGGTACACAAGCAATCCT
CAATACCAGGATGGATATCCATACGCCTACCTTCCTCCGCCTCGTCCAAGTGGATCTTAC
CACTACCCAGGAACTGGCGCATACAGCCCGCGAAGGAGATACTACTGACAAAAATCCTAG
TGCCAATTCCATGCTTTCGTGTGTAATACTGCAAATACAGAACGTTTGCAGTTTCCAGGG
ACACGTATGTTGTTTTGCTAGATGGCTGATGCTGGAAAGAAGTAACATTCAGTTCTGTCT
GGATGCTTAGGTTTTCAATTTATGTTCGAGTGAAAAAGCATCATTAGTCCATAATCTCGT
TTACATTTTGGTCCAAGGAATGATCAGAGAGGATAGAGGATCAACCCTGATATTTTTTGG
GGTTTATACAGTAAAATGCACCTCTCTCGGCATTTCATTGAACACAACATGTGCAACCTC
GCTCCAAAAAAAAAAAAAAA

Homology of Contig U35_17170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g08570.1	729	9e-89	protein\|RNA recognition motif family protein, expressed
Brachypodium v1_2	Bradi3g22570.1	701	0.0
Arabidopsis v10	None