barSeed - Barley Seed Development Database

Probe CUST_198_PI390587928

Source Contig U35_45849

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_198_PI390587928	Hv_44K_v2	AAGTTATCTTAGGCATCGTCGGGTAAGGCATATGGTTAACCCAAATGGATTACAGATGGG	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1151.1	1806	3e-21	1561 - 1620	97	58 / 60	minus	ABC16577 ABC45189
JLOC1	JLOC1_709.1	1867	2e-21	191 - 250	97	58 / 60	plus
Harvest21	ABC45189	622	3e-25	523 - 582	100	60 / 60	minus	ABC45189
Harvest35	U35_45849	622	3e-25	523 - 582	100	60 / 60	minus

Contig Sequence (622 bp)

>U35_45849 622 Hv_44K_v2
TTTTTTTTTTTTTTTTAATGTTGTAGTTGAAATTACACATAATCCATTAAACCTTTGGAG
TTTACTCCTTGCAAATGGCATTACATTCCACGTCGAATCAGAGCATAACGCTCACAGGAA
AACGGATTCAATCGTTTGCTCTTTATAATTAGCCTATGGTACAACATAACCTCATGTAAA
GCTTGCTTTATCCTACCAACACCTACAAAACTGCCTGGCAAAGGCATGTTGTAATCACTC
TCATACACTGTGGTCTTACAGTAGTAACCTAGGGTGGCAAATAAAGGTAATGTAACCGGT
TTGCAACCTTAGTTCTCATCATCCCCATCAATGCTGGAGAGCATGCTCTTCAGTACCTCG
TAGGTCATGAACGCGATCCCAACGCTAGGAACAACCTTCTGATACTCAGGGACTATGCCT
CGGTAGAAGCCATGAGGACCTTCCTTTTGAAGGATTTAGCGGCTCATTAATTATCGCATC
CGCTCGATGTGCTTGCTCCCTCTGGCATGGACAGCCATGCTGCCCATCTGTAATCCATTT
GGGTTAACCATATGCCTTACCCGACGATGCCTAAGATAACTTGCTTAATTAGTCATGCTA
TCTGTCCTTGTGCATTCTGCTG

Homology of Contig U35_45849 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None