barSeed - Barley Seed Development Database

Probe CUST_19897_PI390587928

Source Contig U35_17177

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19897_PI390587928	Hv_44K_v2	CAGAATAGTCTGGTTTACTCCGAGTAAAATTATAAACTATCCCCAAAACTTGACATCCTA	1289	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34155.1	3415	3e-21	3362 - 3415	100	54 / 54	plus	ABC07185
JLOC1	JLOC1_22031.1	3310	8e-25	3207 - 3266	100	60 / 60	plus
Harvest21	ABC07185	1358	3e-25	1248 - 1307	100	60 / 60	plus	ABC07185
Harvest35	U35_17177	1400	3e-25	1290 - 1349	100	60 / 60	plus

Contig Sequence (1400 bp)

>U35_17177 1400 Hv_44K_v2
TCGAGCACTGTTGGCCTAGACTCGTCCATTGATTCATCTTCTCCATTTAGAGAAAAAAAG
AAGACTCTTGGATCGATCAAACCCTAGAGAAAGAGAGAGACTCCTCTTCCATGGCCGGCG
GCGATTCTTCTCCCGTGGCGGCCGCGGCGCGAAAGTTTGAGTGGGCCCAAGAAGATTATC
GGTTCGAGCTGCCGGAGGAATCCTTGGATCCGCGGTACAGCGAGTACGACCCCAAGCAGG
GTTGTTTCATATGCGTCCGCTACTGCTTCGACCGCAAACTCGACCTCGACGAGGAGTCAC
CTGTTGGCCCCATGCGACATACTGGTAAAATCTTCAAAGAGGGGTTCCCGATCTCAAACT
CGGTCAATGTTGTCTCCATCAAGATTGTTTCCTCCGACTATGGCTACCCACTCAATGTCT
ATGGTACCATCATAGCCAGGGACAGTCTGGATCGAAAACGTGTCTATGTATTCCGGCGCG
ACCAGGATGATTGCCAGCTCATCAGCTCAAAGGATGATTCATTGATTTTGACTGGCCCCA
AGAGAGGATTCATGGTATACGATGATATATTCTTCGAAACCAATCTGAAGGTGAAGGATG
TGCATGGGAGGACTGTTGGTGATGATAGACTCAGTAAAGGCCTGATGGAGGTGGATGCTA
TCCGCAGGCTGGAATATAGTCCCAGATATGTGGTTGATATGGAAACACTTGTCAGTATGC
ACAGCACATTGGATTTAAACTATACATTCGTAAGGAGGTCGGTGGAGGGCACTGTTGAGA
TCAAGATCCTTGATGGACCTGATGAATTCTGTGGGAAGATTGTTGCTTCCACTACCAGCA
TTCCGTGTGACATTGTGCTACATGATAGCAAAGTGAGTGGTGCCCTAACTGCAGGTGACA
ATGGAGTCCTACAAATGGCACGGCGCATAGTAGGAGTCTCTGTGGATGAGATGCTGGTGT
TGACTGTTGCGGCTGCTGTCGGTGATGATGCTTTATCTGCCTGCACTGTTCAGTTTACTC
CAAGGCGCAATGGTTACGATGATGAGAATATCACCTGCGGGGACTACAAGATGCTTCTGA
AGGTCACTTGGTCGATTATGTATTTCGGATGTAACTCTTAGTTATTCAGTGGTGGCAGTC
TGCCAGATTCTCTAGATACTTTGGATGCAATGAAGTTTCATTATGGGAACCAGTTATGCT
AGATGCTAAAACAATATATGTGTTCCAGCGTGTATTGTATCTATTCTGACTCTTAAGGCT
GGAGTAAGACTCTTGTGTAGTATTTACATCAGAATAGTCTGGTTTACTCCGAGTAAAATT
ATAAACTATCCCCAAAACTTGACATCCTAAAAGTAATTTCCATACAAAGTTGTTTGCCTT
GTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g03210.1	359	4e-73	protein\|expressed protein
Brachypodium v1_2	Bradi2g39120.1	345	9e-137
Arabidopsis v10	None