barSeed - Barley Seed Development Database

Probe CUST_19893_PI390587928

Source Contig U35_29150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19893_PI390587928	Hv_44K_v2	TTCATATGCTAGTTCGCCGCATATTTAAGGTTGAGACCGGCCATATTGTTCTCATCCACG	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249011.1	1385	2e-24	601 - 660	100	60 / 60	plus	ABC07383
MLOC	MLOC_79278.2	1310	2e-24	339 - 398	100	60 / 60	plus	ABC07383
JLOC1	JLOC1_52816.1	1352	8e-25	339 - 398	100	60 / 60	plus
Harvest21	ABC28348	614	3e-25	525 - 584	100	60 / 60	plus
Harvest21	ABC07383	1409	3e-25	520 - 579	100	60 / 60	plus	ABC07383
Harvest35	U35_29150	614	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_3106	1409	3e-25	520 - 579	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_29150 614 Hv_44K_v2
TTGACGCCCTCGCACCACTCCACCCTTCCAATCCGTCGCCCCCTCCCCCTCCCCTGTCCC
CTCCACTCTCCGCCGCTCCAACCCGCGCCCCCTTCCTCCTCCCGCTACCCGCCACCGCCT
CCGCTGCTGCTGCTCCACGGCGGAGATGGTCAAGGCCATCAGGGTCCACGAGCTCGGCGG
CCCCGAGGCGCTGCAGTGGGAGGAGGTGGAGGTGGGCGAGCCGGGGGACGGCGAGATCCG
GGTCCGGAACACCGCCATCGGCGTCAACTTCATCGACGTCTACTTCCGCAAGGGCGTCTA
CCCCGCTTCCCTCCCCTTCACCCCCGGTATGGAAGCTGTTGGTGTGGTGACCGCTGTAGG
GCCTGGCCTGACCGGTAGGAAAGTCGGGGATGTCGTCGCGTACGCAGGCAAGCCTATGGG
CTCGTATGCTGAAGAGCAGATTATTCCAGCCAATGTTGCTGTTCCTGTCCCGCCTTCAGT
AGATCACAAGACAGCGGCTGCCATCATGCTCAAGGGGATGACTGTTCATATGCTAGTTCG
CCGCATATTTAAGGTTGAGACCGGCCATATTGTTCTCATCCACGCTGCTGCTGGTGGAGT
TGGGTCACTCCTTT

Homology of Contig U35_29150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01190.1	373	2e-68	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi1g78420.1	324	3e-75
Arabidopsis v10	AT5G61510.1	406	5e-60	GroES-like zinc-binding alcohol dehydrogenase family protein \| chr5:24737084-24738975 REVERSE LENGTH=406