barSeed - Barley Seed Development Database

Probe CUST_19882_PI390587928

Source Contig U35_31472

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19882_PI390587928	Hv_44K_v2	CAGCATGCTTGATACTGATGGTGAAGAGTGTAGCACGGTTGATGAGCTGAGGCGGCGGGT	265	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11977.5	2586	2e-24	1266 - 1325	100	60 / 60	plus	None
MLOC	MLOC_11977.1	4287	2e-24	3118 - 3177	100	60 / 60	plus	ABC07281
MLOC	MLOC_11977.2	2924	2e-24	1581 - 1640	100	60 / 60	plus	None
MLOC	MLOC_11977.3	3038	2e-24	1581 - 1640	100	60 / 60	plus	None
JLOC1	JLOC1_7996.2	2623	8e-25	1304 - 1363	100	60 / 60	plus
JLOC1	JLOC1_7996.1	2868	8e-25	1549 - 1608	100	60 / 60	plus
Harvest35	U35_31472	474	3e-25	266 - 325	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_31472 474 Hv_44K_v2
ACAACGCTGATGATGGCGAACCATCCGAAACCAAAGCCGCAGCAGATGAACCGGAGCCTG
AATTTCCCGACAGGGCCACCGCACGGCAGGATTCCTTGAGAGTCCACCACCACCTGAAGC
TGCTGCTCTCGCAGCTCTCCACCTCGTCTTCTTTCCGGGCACCCGACAGCCCGAGCGTGC
AGGAGCAGCAGCACGAGCAGGCCGTGCTGCGCAACATCACCAGGGCGCTCTCCCTGCAGC
GGAACTGCTCGGGCGTCTCCGAAGGCAGCATGCTTGATACTGATGGTGAAGAGTGTAGCA
CGGTTGATGAGCTGAGGCGGCGGGTGGAGCTGGACCGCAGGTCCATGGCCCTCATGTGGA
AGGAGCTGGAGGAGGAGCGGAGCGCGTCGGCGGTGGCGACCAGCCAGGCCATGGCCATGA
TCACCAGGCTGCAGGAGGAGAAGGCGGCGATGCNGACCGAGGCCGCGCAGTACC

Homology of Contig U35_31472 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None